Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g3161 ATGGCTGTTTCTGCGTCATATTTTTTCTGGTTTCAATTTATGATGGCCATCTCTTTCTCAGCCATGGCTTCTTTTACCTTTGATGGAGACTGGCATGATGCTCATGCAACCTTCTATGGCGACATGTCTGGAGGCGAAACCATGCAAGGAGCTTGTGCTTATGGAAACCTATTCGAGCAAGGTTATGGCCTGGAAACGGCAGCCCTAAGCACAGCTCTCTTCAACAACGGTGCTACCTGCGGGGCCTGCTTCGAGCTCGAGTGCGTCAACGACCCGAAGTGGTGCATCCCCGGCGCCGGCAGCATCAAGATCACGGCCACCAACTTCTGTCCACCCAACTACGATCCTCCCATCGAGTACCGCTGGTGCAACCCTCCCAGACAACACTTTGACCTCTCAATGGCCATGTTCACCAAGTTCGCCTACTACAAAGCCGGCATTGTCCCCGTCCGCTACCGCCGTGTCCCGTGCTCCAAGTCCGGCGGTGTCAAGTTCGAGCTCAAGGGCAACCCTTATTGGATAACTACGGTTTTTTTCAACGTGGCCAACACCGGCGACATCACCGACGCCAAGATCAGAGGCGGTAATGGTGGCGATTGGATTCAGATGACAAGGAATTGGGGTCAGCTATGGCAGACCGGGACGAACTTAGTGGGACAAAGCTTGTCATACAAGTTAACTACTAGTGATGGGAAGACTTTGGAGTTTGATAATGTTGCGCCTTCTAATTGGCAGTTTGGTCAGACTTATGAGGGAAATCAGAACTTTTAA 771 0.5149 MAVSASYFFWFQFMMAISFSAMASFTFDGDWHDAHATFYGDMSGGETMQGACAYGNLFEQGYGLETAALSTALFNNGATCGACFELECVNDPKWCIPGAGSIKITATNFCPPNYDPPIEYRWCNPPRQHFDLSMAMFTKFAYYKAGIVPVRYRRVPCSKSGGVKFELKGNPYWITTVFFNVANTGDITDAKIRGGNGGDWIQMTRNWGQLWQTGTNLVGQSLSYKLTTSDGKTLEFDNVAPSNWQFGQTYEGNQNF 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g3161 256 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 49 162 IPR007112 -
Acco02g3161 256 Pfam Lytic transglycolase 66 152 IPR009009 -
Acco02g3161 256 SMART dpbb_1 66 152 IPR007112 -
Acco02g3161 256 SUPERFAMILY Barwin-like endoglucanases 30 180 IPR036908 -
Acco02g3161 256 PRINTS Expansin signature 209 230 IPR002963 GO:0009664
Acco02g3161 256 PRINTS Expansin signature 161 173 IPR002963 GO:0009664
Acco02g3161 256 PRINTS Expansin signature 120 137 IPR002963 GO:0009664
Acco02g3161 256 PRINTS Expansin signature 88 99 IPR002963 GO:0009664
Acco02g3161 256 PRINTS Expansin signature 102 112 IPR002963 GO:0009664
Acco02g3161 256 PRINTS Expansin signature 61 75 IPR002963 GO:0009664
Acco02g3161 256 PRINTS Expansin signature 137 150 IPR002963 GO:0009664
Acco02g3161 256 PRINTS Expansin signature 173 194 IPR002963 GO:0009664
Acco02g3161 256 PRINTS Expansin signature 238 254 IPR002963 GO:0009664
Acco02g3161 256 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 172 252 IPR007117 -
Acco02g3161 256 PANTHER EXPANSIN-A15 18 254 IPR002963 GO:0009664
Acco02g3161 256 Pfam Expansin C-terminal domain 163 241 IPR007117 -
Acco02g3161 256 SUPERFAMILY PHL pollen allergen 159 252 IPR036749 -
Acco02g3161 256 PRINTS Expansin/Lol pI family signature 48 66 IPR007118 GO:0005576
Acco02g3161 256 PRINTS Expansin/Lol pI family signature 238 252 IPR007118 GO:0005576
Acco02g3161 256 PRINTS Expansin/Lol pI family signature 200 214 IPR007118 GO:0005576
Acco02g3161 256 PRINTS Expansin/Lol pI family signature 70 88 IPR007118 GO:0005576
Acco02g3161 256 PRINTS Expansin/Lol pI family signature 30 45 IPR007118 GO:0005576
Acco02g3161 256 PRINTS Expansin/Lol pI family signature 145 161 IPR007118 GO:0005576
Acco02g3161 256 CDD DPBB_EXPA_N 30 157 - -
Acco02g3161 256 Gene3D - 161 256 IPR036749 -
Acco02g3161 256 Gene3D - 15 158 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g3161 Acco-ChrAcco02 43091540 43093719 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g3161 27 256 Expansin Gene Family AT5G39280 62.174 4.07e-108 311