Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g3139 ATGCCGGAGATGGCCGTCAACGTTTCAGCTAATTCCAACGGCGGTGTTAATGGTGGTGGTCATCAGTTCGGAGACACCACGCTCACCAAGGTTTTTGTTGGTGGATTGGCTTGGGAGACTCCCAAGGACGCCATGAGAGAGCATTTTCAGAAGTACGGCGAGATCCTCGAGGCCGTCATTATCTCCGATAAGGCCACCGGCAGATCCAAGGGCTATGGCTTCGTGACCTTTAAGGAAGCTGAAGCTGCAAAGAAGGCTTGTGAGGATCCTACGCCGATCATCAATGGCCGCCGAGCCAACTGCAATCTGGCTTCGCTCGGCGCACGACGCCCTAGGTCCACCAACACTTCACCGCCCCGTCAACAAGGATCGAACGGCGGAGGACCAAGGAACGCCCAAAGCGCCCCACCCACGCCAGCCAATCACGCCCCGTGGTATTATCCAGTGGGGACCCCTGCTTCACATTTTCATCATCATCCCCACCACCAACCTGTTCCTCTATATGGGTACACCCCAACGTACATTCCAACTGACATAAATTACAATCAGAAGCTAAGCTACAGTGGCGGTGGGCCCTACATGAATGGTTACTACTCTCCAATGTACCCGAGCCAGGCTATGGTGGGTGGGAACACATTGATGCCGATGTACCCTCTTTATCAGTACCATCAAACTCACACGATGGGCTTATCGGCCCACATCTTCCACCCAACCACAGCGGGGCACGTGGCAATCATGTCGAAGCCAGCGTCCATCACTCCGAACACAGGTGTCGTTGGGGGAGGTGAAGGTTTGAAAAAGACTGATCTGAATATTGTTGAGCTCAGGAAATGGACATTGTGA 843 0.5374 MPEMAVNVSANSNGGVNGGGHQFGDTTLTKVFVGGLAWETPKDAMREHFQKYGEILEAVIISDKATGRSKGYGFVTFKEAEAAKKACEDPTPIINGRRANCNLASLGARRPRSTNTSPPRQQGSNGGGPRNAQSAPPTPANHAPWYYPVGTPASHFHHHPHHQPVPLYGYTPTYIPTDINYNQKLSYSGGGPYMNGYYSPMYPSQAMVGGNTLMPMYPLYQYHQTHTMGLSAHIFHPTTAGHVAIMSKPASITPNTGVVGGGEGLKKTDLNIVELRKWTL 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g3139 280 Gene3D - 23 136 IPR012677 -
Acco02g3139 280 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 29 106 IPR000504 GO:0003723
Acco02g3139 280 SMART rrm1_1 30 102 IPR000504 GO:0003723
Acco02g3139 280 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 31 88 IPR000504 GO:0003723
Acco02g3139 280 MobiDBLite consensus disorder prediction 107 138 - -
Acco02g3139 280 CDD RRM_RBM24_RBM38_like 29 104 - -
Acco02g3139 280 MobiDBLite consensus disorder prediction 106 144 - -
Acco02g3139 280 FunFam Putative RNA-binding protein ARP1 23 112 - -
Acco02g3139 280 SUPERFAMILY RNA-binding domain, RBD 25 131 IPR035979 GO:0003676
Acco02g3139 280 PANTHER BOULE-RELATED 12 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g3139 Acco-ChrAcco02 42802416 42805534 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g3139 25 105 C2H2 Transcription Factor Family AT2G19380 41.975 8.43e-16 75.5