Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g3127 ATGGAATCTCCTCATATTACATTATTGGAAGACTTGACCCAAGAAGAAACATCTCCTCCTGTTTCAAATTTGGAAGACACAATCGAAGAAGATAGTTTCCGTATCAAATTCACAGTTGAAGATCATGGGAGCATGGAGACTTCTCTTGATGATGCAGAAATTATTTTAATGATAGATGCCATAGATCAATCTATGCAACAATTGTCTCTGGTTCCAGCATCTGAAGAAGCTATGGCATCACTAAAGAAAATAAAAATGCCTCGTGAAGAAATTAATGCAGACATATGCACTATTTGCTTAGAAAATTTTGAAGATGATGACGCCAATGTTTCAGCAACACCGTGTGACCATGTTTATCACAACAATTGTATTGTGAAATGGCTGAAAACAAGTCATACATGTCCATTGTGTCGCTACCAAATGTCTACCACATAA 435 0.3655 MESPHITLLEDLTQEETSPPVSNLEDTIEEDSFRIKFTVEDHGSMETSLDDAEIILMIDAIDQSMQQLSLVPASEEAMASLKKIKMPREEINADICTICLENFEDDDANVSATPCDHVYHNNCIVKWLKTSHTCPLCRYQMSTT 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g3127 144 CDD RING-H2_PA-TM-RING 96 138 - -
Acco02g3127 144 SMART ring_2 96 137 IPR001841 -
Acco02g3127 144 SUPERFAMILY RING/U-box 81 142 - -
Acco02g3127 144 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 59 143 IPR013083 -
Acco02g3127 144 SMART ringv_2 95 138 IPR011016 GO:0008270
Acco02g3127 144 MobiDBLite consensus disorder prediction 1 23 - -
Acco02g3127 144 Pfam Ring finger domain 95 138 IPR001841 -
Acco02g3127 144 ProSiteProfiles Zinc finger RING-type profile. 96 138 IPR001841 -
Acco02g3127 144 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 20 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g3127 Acco-ChrAcco02 42556990 42557763 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g3127 58 141 C3H Transcription Factor Family AT1G21960 36.364 4.53e-14 64.7