Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g3090 ATGGCCACCTCCCAGCATCGCTGCGTTTTTGTTGGGAATATACCGTATGATGCCACAGAGGAACAGCTTATTGAAATCTGCCAGGAGGTTGGGCCTGTAGTATCATTCAGATTAGTTATTGATAGAGAAACTGGAAAACCAAAAGGTTATGGGTTCTGTGAGTATAAGGATGAAGAGACAGCTCTAAGTGCCCGTCGTAACCTTCAGGGTTATGAGATTAATGGGCGGCAGTTGCGTGTTGATTTTGCTGAAAATGACAAAGGTGCTGACAGAAATAGAGAACAGGGTCGCGGTGGGCCTGGATTGGCAGCAAATGTTGACCCTCAGAAACAAGTAGCTGGACCAGTTGTCCCTGGGGAACATCAACCTATTGGTCTTCATACTGCTATAACAGCTGCAACTGTCATGGAAGCAGCTCTAGGAGGGCCTCAATCTGGCATCCAGTCAAATCAAAATGGTTTGCGGGTTCAGTCAGGATTGACACATGACCCTTTAACTCTGCATTTGGCCAAACTATCCCGGAATCAGCTGACTGAGATTGTCTCTGAACTTAAGGCAATGGCTACACATAACAAGGAATCAGCTCGTCAGTTGTTACTTTCTAGACCTCAGTTGCCTAAGGCCCTTTTTCAGGCACAGATAATGCTAGGAATGGTAACCCCGCAAGTGTTACAAATGCCAAACCTTAGGCAAGTTGCAGGGGAAACCTCGCAGCCTCCAGTAGATGACAGCCAGCTAGGTCAGTCGGCAGTTCTTCAATTATCTGGGCTGCCTTCTCATGCGCCGATCAAGTTGCTATCTGGCTTGATGCCCAATATTCAAGAAACTCAAGCCAGTGCTTTACATCATAATTCTTTGGTCCCCAATCAATCAGTTGCACACCCAAAGCCTCCTTTGCAGCCTCGAATGCAGCTTCCACAACACACAGGTAACCCTGTGGTACAGCTGGGCACATTGCCAGGGCATTCTAGTTCATTGCTTCCTTCGGTGCGTCCCCAGTCTTCATTTAGTTTGCCTGTTAGACCAACAAATCAGCCCGGTTTGTCTGTTGGACCACCAATCCAGCTGACAACTTCAACTTCTCTGACTCAGCAAATGCATTTGCCACAACACTCAGGGATTGGTAACTCAAGTGCAGGGCAAAATATTCGGTTGATTCGTCCAGATGCAGGCTTTCAGCCTGGCCCGTCCATATCATCAAGTATTCCTCTGTCAATTGGCAGGGAAGCTGACAGATCAGCTAAAGTTATTGAAGATTCTAATTGGGCCAAGAAAAGTAGTACATATTCAAACATTGCTCTTGGGTCAGGAGAGAAAATAAATGAGCCTTCAGAACCATTTAACCGTCCTTCTAAGCAGATTAAGTTAGATGATGGAAGGAACACGTCTTTCTCTGCAGGAGTCAGAAATGTGTCTGTTTCCAAGGGAACTTCCCATGTCCTTGGAAGTGTGCCATTGCCTGTAAATGCAACTTCAAAGTCGGAAGTGCGATACCCTGAGCAACAATCCTCTCAGCCTCAGCTTCAGCCTGACGTGGAATCGGTTTTACTGCAACAAGTGTTGAGTCTCACGCCTGAGCAATTGAGTTCCCTGCCACCGGAGCAGCAACAGCAGGTTTTACAGCTTCAGCAGGCTCTCCGGCGAGACCAGACTCAGCCCTCATAG 1665 0.4733 MATSQHRCVFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGADRNREQGRGGPGLAANVDPQKQVAGPVVPGEHQPIGLHTAITAATVMEAALGGPQSGIQSNQNGLRVQSGLTHDPLTLHLAKLSRNQLTEIVSELKAMATHNKESARQLLLSRPQLPKALFQAQIMLGMVTPQVLQMPNLRQVAGETSQPPVDDSQLGQSAVLQLSGLPSHAPIKLLSGLMPNIQETQASALHHNSLVPNQSVAHPKPPLQPRMQLPQHTGNPVVQLGTLPGHSSSLLPSVRPQSSFSLPVRPTNQPGLSVGPPIQLTTSTSLTQQMHLPQHSGIGNSSAGQNIRLIRPDAGFQPGPSISSSIPLSIGREADRSAKVIEDSNWAKKSSTYSNIALGSGEKINEPSEPFNRPSKQIKLDDGRNTSFSAGVRNVSVSKGTSHVLGSVPLPVNATSKSEVRYPEQQSSQPQLQPDVESVLLQQVLSLTPEQLSSLPPEQQQQVLQLQQALRRDQTQPS 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g3090 554 MobiDBLite consensus disorder prediction 492 511 - -
Acco02g3090 554 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 79 IPR000504 GO:0003723
Acco02g3090 554 PANTHER CLEAVAGE STIMULATION FACTOR SUBUNIT 2 3 550 - -
Acco02g3090 554 Pfam Transcription termination and cleavage factor C-terminal 516 548 IPR026896 GO:0031124
Acco02g3090 554 Gene3D - 1 111 IPR012677 -
Acco02g3090 554 SUPERFAMILY RNA-binding domain, RBD 4 101 IPR035979 GO:0003676
Acco02g3090 554 MobiDBLite consensus disorder prediction 84 121 - -
Acco02g3090 554 Gene3D - 151 227 - -
Acco02g3090 554 MobiDBLite consensus disorder prediction 526 554 - -
Acco02g3090 554 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 85 IPR000504 GO:0003723
Acco02g3090 554 SMART rrm1_1 8 81 IPR000504 GO:0003723
Acco02g3090 554 Pfam Hinge domain of cleavage stimulation factor subunit 2 161 225 IPR025742 -
Acco02g3090 554 MobiDBLite consensus disorder prediction 304 349 - -
Acco02g3090 554 MobiDBLite consensus disorder prediction 434 461 - -
Acco02g3090 554 Gene3D - 509 553 IPR038192 -
Acco02g3090 554 FunFam Cleavage stimulating factor 64 1 116 - -
Acco02g3090 554 MobiDBLite consensus disorder prediction 288 349 - -
Acco02g3090 554 CDD RRM_CSTF2_RNA15_like 7 83 - -
Acco02g3090 554 FunFam Cleavage stimulating factor 64 152 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g3090 Acco-ChrAcco02 41516120 41523770 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g3090 9 82 Eukaryotic Initiation Factors Gene Family AT2G23350 31.081 1.56e-07 52.4