Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g3046 ATGGGAAATATTGTTCCTTCTAGTGTTTCCCCATCTGTGTTATTTTCTCTGTTCTTCTTCTGGCTGATCATGGCAAAGACTGAACAAGTCTCCTCTCTCTCACCTGATGGACAAGCCCTTCTTTCCCTTATATCTTCAGCTGATCCTTCTGCAAAAGCCTCCTCTTCTGTTCTCTCTTCATGGAACCCATCAAGCCAAACCCCTTGTTCATGGCATGGTGTTACTTGCTCCCCACAAGGCAGAGTTATTTCATTATCTATTCCAGACACTTTCCTTAACATTTCTTCTCTGCCTTCCCAGCTTTCTTCTTTGTCATATCTGCAACTTCTCAATCTGTCTTCCACTAATATATCTGGCTCTATTCCACCTTCTTTTGGCCTACTCTCCCATCTTCGCCTCCTTGATATTTCTTCAAATGCTCTCACTGGTTCCATTCCTGAAGAACTCGGCAAACTCTCTTCGTTGCAGTTCCTTTACTTGAACTCCAATGGATTGACTGGAAAGATTCCTCAGCAACTAGCTAATCTTACTTCACTTCAAGTTTTCTGCCTTCAAGACAATCTCTTTAATGGGTCAATACCATCTCAATTAGGCTCTTTGACATCTCTACAAGAGTTTCGGATTGGGGGTAATCCTTATCTAAGTGGTGCAATTCCTCAACAATTAGGACTTCTAACCAATCTCACTACATTTGGGGCTGCTGCTACTGGACTTTCAGGTGTTATTCCCTCTACATTCGGGAACTTGATCAATCTCCAAACGCTAGCACTTTATGATACAGAAATTTCTGGTTCTATACCACCAGAGCTTGGCTTGTGTTCTGAGCTAAGGAATTTGTATTTGCACATGAATAAGCTGACAGGTTCTATCCCACCTCAACTGGGTAAGTTGCAAAAGCTTACTAGCTTGCTTCTTTGGGGCAATGCCTTATCTGGGTCGATCCCTGCTGAGATTTCTAATTGTTCATCACTTGTTGTGTTTGATGCCTCTGCTAATGAACTTTTGGGTGAAATACCACATGATTTTGGAAAACTGGTGGTTCTAGAACAGCTCCATATATCAGACAACTCTCTCACAGGGAAAATACCATGGCAACTGAGCAACTGCACTAATCTTGCTACTCTTCAGCTTGACAAGAATCAGTTATCAGGTACTATTCCATGGCAAGTTGGGAGATTGAAGTATTTGCAGAGTCTTTTCTTGTGGGGTAATTCGGTGTCTGGAACCATTCCTGCCTCTTTTGGTAACTGTACAGAACTTTATGCACTTGATCTTTCAAGGAACAAGCTAACAGGTTCAATTCCAGATGAAATTTTCGGCTTGAAGAAGCTGAGTAAGCTTTTGCTTCTGGGAAATTCCTTGTCTGGAGAATTACCACCAAGTGTTTCAAATTGTGAGTCTCTAGTACGGTTGAGGCTTGGAGAAAATCAGCTTTCAGGACACATTCCTAGAGAGATCGGCCAACTGCAGAATCTGGTGTTCCTCGACTTGTACATGAACCATTTCTCAGGAAGCTTGCCGGTGGAGATTGGTAACATCACAGTTCTTGAGCTTCTAGATGTTCATAATAACCAGATTACTGGGGATATCCCATCTCCGCTTGGGGAGCTTGTAAATTTAGAGCAGCTAGATCTCAGTAGAAACAGTTTGACAGGTGGAATTCCTTGGAGCTTTGGAAACTTAAGTTATTTGAACAAGCTCATTCTCAACAATAATTTACTCACAGGGTCAATCCCAAAATCCATTAGAAATTTGCAGAAGCTAACGCTATTGGATTTGAGTTACAATAACTTCTCTGGAGACATCCCATCTGAGATTGGTTATGTTACAAGTTTAACCATCAGTTTGGACTTGAGCTCAAATGCATTTACAGGAGAAATCCCTGAGTCAATGAGCGGTTTGACTCAGTTACAATCACTTGATCTTTCTCATAATTTGCTTTATGGAGGAATTGAGATTCTTGGTTCCCTCACCAGTCTCACTTCCCTAAACATCTCCTACAACAACTTCTCAGGTCCTATCCCAGTAACTCCTTTCTTTAGAACCCTATCTTCAAATTCATATTTGGAGAATGCCCATCTCTGTGAATCCCTCGACGGGACCACATGTTCTAGTCTGCTTAGAAGAAATGGTCTAAAGTCTGCCAAAACCATAGCTTTGATATCGGTAATTATTGCCTCAGTTACCATAGTTGTCATTGCATCTTGGATTTTGGTGACGCGAAATCACAAGAATATGATTGAAAAATCTTTGGGGACGTCAACATCTGCTTCAGGAGCTGAGGATTTCTCTTATCCTTGGACTTTCATCCCATTTCAAAAACTGAACTTCTCCATAGATAATATCTTGGATTGCTTGAAGGATGAGAATGTGATTGGAAAGGGTTGCTCCGGCGTTGTATACAAAGCTGAAATGCCTAATGGGGAGTTGATAGCAGTAAAGAAGCTTTGGAAAGCAAGCAAAGAGGAAGAAACTGTGGACTCTTTTGCTGCAGAAATTCAGATTCTCGGGCACATCCGGCATAGGAACATTGTGAGGTTCCTGGGTTATTGTTCTAACAGAAGTGTTAAGCTTCTTCTCTATAATTACATTCCGAATGGCAACCTAAGACAGCTGTTGCAAGGGAACAGGTATCTAGACTGGGAAACTCGGTACAAGATTGCTGTCGGGTCAGCTCAGGGTCTAGCATACCTTCATCATGACTGTTTGCCAGCGATCCTTCACAGAGATGTTAAATGCAATAACATACTTCTAGATTCCAAGTTTGAGGCATATCTGGCTGATTTTGGTCTTGCCAAGCAGATGAGTTCACCAAATTATCACCATGCAATGTCCAGAGTCGCTGGCTCTTATGAGTATGGCTATACCATGAATATAACAGAGAAGAGTGATGTCTACAGTTATGGAGTGGTTTTGCTTGAGATACTGAGTGGGAGAAGTGCTGTAGAGTCCCATTTTGGGGATGGAGTACACATAGTTGAGTGGGTGAAGAGGAAGATGGGAAGCTTTGAACCAGCAGTGTCAATTCTAGACACAAAGCTTCAAGGCCTACCAGATCAAATGGTGCAAGAGATGCTTCAAACTCTTGGGATTGCCATGTTCTGTGTCAACTCTTCACCGGCCGAACGACCAACGATGAAGGAGGTGGTGGCTCTGTTAATGGAAGTGAAGAGCCCACCTGAGGAAGTGGGAAAGACCTCTCAGCCTCTAATAAAGTAG 3219 0.4234 MGNIVPSSVSPSVLFSLFFFWLIMAKTEQVSSLSPDGQALLSLISSADPSAKASSSVLSSWNPSSQTPCSWHGVTCSPQGRVISLSIPDTFLNISSLPSQLSSLSYLQLLNLSSTNISGSIPPSFGLLSHLRLLDISSNALTGSIPEELGKLSSLQFLYLNSNGLTGKIPQQLANLTSLQVFCLQDNLFNGSIPSQLGSLTSLQEFRIGGNPYLSGAIPQQLGLLTNLTTFGAAATGLSGVIPSTFGNLINLQTLALYDTEISGSIPPELGLCSELRNLYLHMNKLTGSIPPQLGKLQKLTSLLLWGNALSGSIPAEISNCSSLVVFDASANELLGEIPHDFGKLVVLEQLHISDNSLTGKIPWQLSNCTNLATLQLDKNQLSGTIPWQVGRLKYLQSLFLWGNSVSGTIPASFGNCTELYALDLSRNKLTGSIPDEIFGLKKLSKLLLLGNSLSGELPPSVSNCESLVRLRLGENQLSGHIPREIGQLQNLVFLDLYMNHFSGSLPVEIGNITVLELLDVHNNQITGDIPSPLGELVNLEQLDLSRNSLTGGIPWSFGNLSYLNKLILNNNLLTGSIPKSIRNLQKLTLLDLSYNNFSGDIPSEIGYVTSLTISLDLSSNAFTGEIPESMSGLTQLQSLDLSHNLLYGGIEILGSLTSLTSLNISYNNFSGPIPVTPFFRTLSSNSYLENAHLCESLDGTTCSSLLRRNGLKSAKTIALISVIIASVTIVVIASWILVTRNHKNMIEKSLGTSTSASGAEDFSYPWTFIPFQKLNFSIDNILDCLKDENVIGKGCSGVVYKAEMPNGELIAVKKLWKASKEEETVDSFAAEIQILGHIRHRNIVRFLGYCSNRSVKLLLYNYIPNGNLRQLLQGNRYLDWETRYKIAVGSAQGLAYLHHDCLPAILHRDVKCNNILLDSKFEAYLADFGLAKQMSSPNYHHAMSRVAGSYEYGYTMNITEKSDVYSYGVVLLEILSGRSAVESHFGDGVHIVEWVKRKMGSFEPAVSILDTKLQGLPDQMVQEMLQTLGIAMFCVNSSPAERPTMKEVVALLMEVKSPPEEVGKTSQPLIK 1072
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g3046 1072 FunFam Putative LRR receptor-like serine/threonine-protein kinase 436 705 - -
Acco02g3046 1072 Pfam Leucine Rich repeats (2 copies) 516 551 IPR025875 -
Acco02g3046 1072 SUPERFAMILY L domain-like 58 405 - -
Acco02g3046 1072 Gene3D Ribonuclease Inhibitor 194 287 IPR032675 -
Acco02g3046 1072 ProSitePatterns Serine/Threonine protein kinases active-site signature. 906 918 IPR008271 GO:0004672|GO:0006468
Acco02g3046 1072 Gene3D Ribonuclease Inhibitor 387 482 IPR032675 -
Acco02g3046 1072 Gene3D Phosphorylase Kinase; domain 1 756 863 - -
Acco02g3046 1072 SMART serkin_6 786 1057 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco02g3046 1072 ProSitePatterns Protein kinases ATP-binding region signature. 792 815 IPR017441 GO:0005524
Acco02g3046 1072 ProSiteProfiles Protein kinase domain profile. 786 1071 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco02g3046 1072 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 33 211 - -
Acco02g3046 1072 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 212 435 - -
Acco02g3046 1072 SMART LRR_typ_2 537 560 IPR003591 -
Acco02g3046 1072 SMART LRR_typ_2 634 661 IPR003591 -
Acco02g3046 1072 SMART LRR_typ_2 176 200 IPR003591 -
Acco02g3046 1072 SMART LRR_typ_2 585 609 IPR003591 -
Acco02g3046 1072 SMART LRR_typ_2 249 273 IPR003591 -
Acco02g3046 1072 SMART LRR_typ_2 417 441 IPR003591 -
Acco02g3046 1072 SMART LRR_typ_2 128 152 IPR003591 -
Acco02g3046 1072 SMART LRR_typ_2 465 489 IPR003591 -
Acco02g3046 1072 SMART LRR_typ_2 297 321 IPR003591 -
Acco02g3046 1072 SUPERFAMILY Protein kinase-like (PK-like) 771 1054 IPR011009 -
Acco02g3046 1072 Pfam Leucine rich repeat N-terminal domain 34 77 IPR013210 -
Acco02g3046 1072 PRINTS Leucine-rich repeat signature 634 647 - -
Acco02g3046 1072 PRINTS Leucine-rich repeat signature 420 433 - -
Acco02g3046 1072 Pfam Protein kinase domain 788 1050 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco02g3046 1072 Gene3D Transferase(Phosphotransferase) domain 1 864 1067 - -
Acco02g3046 1072 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 864 1070 - -
Acco02g3046 1072 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 767 863 - -
Acco02g3046 1072 Pfam Leucine rich repeat 395 454 IPR001611 GO:0005515
Acco02g3046 1072 Pfam Leucine rich repeat 106 165 IPR001611 GO:0005515
Acco02g3046 1072 Gene3D Ribonuclease Inhibitor 288 386 IPR032675 -
Acco02g3046 1072 Gene3D Ribonuclease Inhibitor 579 705 IPR032675 -
Acco02g3046 1072 Gene3D Ribonuclease Inhibitor 34 193 IPR032675 -
Acco02g3046 1072 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 308 1053 - -
Acco02g3046 1072 Gene3D Ribonuclease Inhibitor 483 578 IPR032675 -
Acco02g3046 1072 SUPERFAMILY L domain-like 380 708 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g3046 Acco-ChrAcco02 40381684 40385344 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g3046 32 1057 Receptor kinase-like Gene Family AT5G56040 45.646 0.0 841
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Acco02g3046 Pkinase 1.1e-39 CL0016