Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g3015 ATGGGCTCTCACCAGGTTAAGCCATCTAGGTCTTTGGAGAGGTTCGAATTACAAAATGGTTATGCCGGCGATGGTGACTTTGCTGCTCCTAGACGATCCACGGGGAAAAAAAAAGATCGTACGGAGTATTGCCGGCAAAACCAGCGCGAACCCTCGAAAGCTAAGGTTGAATCTGGTACTGGCAATAATCAAAGACAGGGTGGTGACGTTGCAGCTGCAGAAAGAGTTAGGGATAAGGCGAAATTGAATAACAGAGAGGGAAAGAAGGATGCTGAGCGTAGTCATTTGAATGTATCGAGGAAGTCTTTTGAAGATGATATGGTTGATGGATGGCCCAAATGGCTGGTTGATAACGTTCCAAAGGAAGCATTGACTGGCTTGACTCCCAAGAGTGCTGAATCGTATAGTATGATTAATAAGGCAGGGCAGGGAACTTATAGCAATGTTTATAAAGCTCGAGATCGGAACACTGGGGAATTAGTGGCCCTCAAGAAGGTGCGCCTTGACACTTCAAAGCCTGAATGCATTAAATTCATGGCAAGAGAAATTATGATATTACGGAGACTGGATCATCCCAATGTATTAAAACTCAAAGGATTGGCTACTTCAAGAATGCATTATAGTCTTTATCTCGTTTTTGACTTCATGCATTCTGACTTGGCTAGAATAACTTATCGTCCAATGAGATTGACTGAACCACAGGTCAAGGCCTACATGCATCAATTGCTTTCAGGTCTGCAGCATTGCCATGAGAGGGGCATTTTGCATAGAGATATCAAAGGTTCAAACCTTTTGATTGATAAAAGTGGGATGCTTAAGATTGCAGATTTCGGGCTGGCCAATTATTATAATCCCAACCATAATCAGCCTCTCACGAGCAGGGTCGTGACACTATGGTACAGAGCTCCTGAGCTGCTGCTAGGTGCTACAGATTATGGAGTTGGAGTTGATTTATGGAGTGCTGGATGCCTCCTGGCAGAAATGCTCACGGGAGCTCCTATTATGCCTGGTAAAACAGAGGTGGAGCAACTTCATAGAATTTTTAGGCTATGTGGCACGCCATCAGAGGATTATTGGAAAAAATTCAAAGCTACTCGGACTTTTAAGCCTCCGAGGTCTTATAAACCCTCCCTTGTAGAGACTTTCAAAGATTTCCCTCCATCTTCTTTGGGTCTATTATGTACTCTGCTTTCCTTGGATCCTGCTTATCGTGGAACTGCATCTAAAGCTCTCCAAAATCAATTTTTCTATACAAGTCCTTTGGCATGTGACCTCTCCGGTCTACCCATGGTCTGCAATGAAGAGGAGGAGCAAGATCAAGCCGATGAACAAATCAAATGCATGAATTCTAAACTCAGACGCTCACGTACATTACTTGAGCATCGCAGAAAGAGTCTGGCATCTGAAAAGACAGCCGAACCCACCATATCATCTAAAGAGGAATTGAGAAAGAATGCTGATACATACGTCCCACATGAAGAACTGGGTAGCACAACAACAACAACCAGTAGTACCTTATCAAGTTTGAATCCTCCTGATGCAAAGGATTTTTCTTCACCTATCTTCTCTCCAGATGTGTCCTCAGATCAAAAGCTGATCCTAAAAACCGATTGTGATGATAATGGCGGTGGCAACATTCATAAACTTCCTCCATTACCCAAGTTGAAATCACGTAAAGCCTGGGGAGAAGATACCATGCACGGATTTTACCCTGTTGGCAGGTCTTCTTCCACCAGAGATTTCAGAATTTCAAGACAAAGGAATCGATTACTTGATCAAACAGATGATGAGACTGCCAAAGATGACATGTAA 1812 0.4332 MGSHQVKPSRSLERFELQNGYAGDGDFAAPRRSTGKKKDRTEYCRQNQREPSKAKVESGTGNNQRQGGDVAAAERVRDKAKLNNREGKKDAERSHLNVSRKSFEDDMVDGWPKWLVDNVPKEALTGLTPKSAESYSMINKAGQGTYSNVYKARDRNTGELVALKKVRLDTSKPECIKFMAREIMILRRLDHPNVLKLKGLATSRMHYSLYLVFDFMHSDLARITYRPMRLTEPQVKAYMHQLLSGLQHCHERGILHRDIKGSNLLIDKSGMLKIADFGLANYYNPNHNQPLTSRVVTLWYRAPELLLGATDYGVGVDLWSAGCLLAEMLTGAPIMPGKTEVEQLHRIFRLCGTPSEDYWKKFKATRTFKPPRSYKPSLVETFKDFPPSSLGLLCTLLSLDPAYRGTASKALQNQFFYTSPLACDLSGLPMVCNEEEEQDQADEQIKCMNSKLRRSRTLLEHRRKSLASEKTAEPTISSKEELRKNADTYVPHEELGSTTTTTSSTLSSLNPPDAKDFSSPIFSPDVSSDQKLILKTDCDDNGGGNIHKLPPLPKLKSRKAWGEDTMHGFYPVGRSSSTRDFRISRQRNRLLDQTDDETAKDDM 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g3015 603 SMART serkin_6 135 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco02g3015 603 Gene3D Phosphorylase Kinase; domain 1 127 225 - -
Acco02g3015 603 MobiDBLite consensus disorder prediction 53 67 - -
Acco02g3015 603 MobiDBLite consensus disorder prediction 30 52 - -
Acco02g3015 603 FunFam Putative serine/threonine-protein kinase 218 454 - -
Acco02g3015 603 MobiDBLite consensus disorder prediction 566 603 - -
Acco02g3015 603 MobiDBLite consensus disorder prediction 492 514 - -
Acco02g3015 603 ProSiteProfiles Protein kinase domain profile. 135 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco02g3015 603 MobiDBLite consensus disorder prediction 71 97 - -
Acco02g3015 603 MobiDBLite consensus disorder prediction 1 97 - -
Acco02g3015 603 MobiDBLite consensus disorder prediction 580 603 - -
Acco02g3015 603 ProSitePatterns Serine/Threonine protein kinases active-site signature. 254 266 IPR008271 GO:0004672|GO:0006468
Acco02g3015 603 MobiDBLite consensus disorder prediction 460 523 - -
Acco02g3015 603 PANTHER CELL DIVISION PROTEIN KINASE 133 421 - -
Acco02g3015 603 FunFam probable serine/threonine-protein kinase At1g54610 122 217 - -
Acco02g3015 603 Gene3D Transferase(Phosphotransferase) domain 1 226 456 - -
Acco02g3015 603 SUPERFAMILY Protein kinase-like (PK-like) 130 420 IPR011009 -
Acco02g3015 603 MobiDBLite consensus disorder prediction 460 490 - -
Acco02g3015 603 Pfam Protein kinase domain 135 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g3015 Acco-ChrAcco02 39368905 39373548 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g3015 130 463 Core Cell Cycle Gene Families AT5G10270 44.382 4.32e-95 299
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Acco02g3015 Pkinase 6.2e-68 CL0016