LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Acco02g3003	ATGGATCACACCCTCCAAGCCGTCCTCGCCGCCGCCATTAGCTTCTTCATCGTCACCCTCATCTTCGCAGCCATCATCCTCCTCTGCAAAAGCAACACCAAAACCCATCCCCGTCAGCGTCAATACCGTACCCCAACTCAAAATCGGACCCAGTCGGAGCTATCCTCCGTCGTCGTCGACGGTAGCTGGTCGTTCGATCCCTACGTTCAGTTCACTTGGGACGAGATCACTAAAGCTACTAATAATTTCTCCCCCGACCTCATCATCGGCGACGGCAGCTTCGGCCTCGTCTACAAAGCGAGTCTCTCCAACGGCCTCGTCGTCGCCATCAAGAAGCTCTCGCCGGACGCATTCCAAGGATTTCGTGAATTCCGTGCTGAGATGGAAACCCTAGCTAAGCTCCGGCATCCAAATATCGTCAGGATCCTCGGTTACTGGTCGGCGGGACAGGAGAGAATGTTGGTCTACGAGTTCATGGAGAGAGGCAATCTCGATCAATGGTTTCACGATCCAACGATCTCATCGTCGTCTGGACACGACGATGTTTCAATGCCGCGGGCCCCACTCCCGTGGAGGGTGAGGTTGAAGATAATCAGAGGCATTGCAAATGGGCTTGTTTACTTACATGGGCTGGACAAGCCCATTATTCACAGAGACATTAAGGCTGGTAATGTGTTGCTGGATTCTGATTTTGAGGCCCATATTGCTGATTTTGGGCTCGCTAGGAGGATTGATGCTTCGAACTCTCATGTGTCGACTCAGTTCGCCGGAACCATGGGTTACATGCCGCCGGAGTACAGAAATGGGGTGAATGTGGCTAATGTGAAGGTGGATGTCTATAGTTTTGGGGTTTTGATGCTTGAAACCGCGACAGGCCGGCGGCCCAATCTGTCGGTGAAGTTTGAGAATCAGGATATTGGGCTTGTGCAATGGGCCATGAAAATGGAGGCCCAGAACTCCGAAATGGAAATGGTTGATCCCAATATTTCAAGAGAAGGAATAAGTGAAGATAGTGTGAAGGAGTACTTTAGGATTGCTTGTAAGTGCACGAGTGAATTCCAGAAAGACAGACCTGTGATGCCAGAAGTGTTGGAATTGTTCGAGAAGATGGCCATGTAA	1119	0.5085	MDHTLQAVLAAAISFFIVTLIFAAIILLCKSNTKTHPRQRQYRTPTQNRTQSELSSVVVDGSWSFDPYVQFTWDEITKATNNFSPDLIIGDGSFGLVYKASLSNGLVVAIKKLSPDAFQGFREFRAEMETLAKLRHPNIVRILGYWSAGQERMLVYEFMERGNLDQWFHDPTISSSSGHDDVSMPRAPLPWRVRLKIIRGIANGLVYLHGLDKPIIHRDIKAGNVLLDSDFEAHIADFGLARRIDASNSHVSTQFAGTMGYMPPEYRNGVNVANVKVDVYSFGVLMLETATGRRPNLSVKFENQDIGLVQWAMKMEAQNSEMEMVDPNISREGISEDSVKEYFRIACKCTSEFQKDRPVMPEVLELFEKMAM	372

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Acco02g3003	372	Gene3D	Phosphorylase Kinase; domain 1	43	158	-	-
	Acco02g3003	372	Gene3D	Transferase(Phosphotransferase) domain 1	159	372	-	-
	Acco02g3003	372	FunFam	Phytosulfokine receptor 2	45	158	-	-
	Acco02g3003	372	FunFam	Phytosulfokine receptor 2	159	371	-	-
	Acco02g3003	372	Pfam	Protein kinase domain	88	364	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Acco02g3003	372	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	215	227	IPR008271	GO:0004672\|GO:0006468
	Acco02g3003	372	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	3	369	-	-
	Acco02g3003	372	SUPERFAMILY	Protein kinase-like (PK-like)	63	367	IPR011009	-
	Acco02g3003	372	CDD	STKc_IRAK	89	370	-	-
	Acco02g3003	372	ProSiteProfiles	Protein kinase domain profile.	83	372	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Acco02g3003	372	ProSitePatterns	Protein kinases ATP-binding region signature.	89	112	IPR017441	GO:0005524
	Acco02g3003	372	SMART	serkin_6	83	367	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Acco02g3003	Acco-ChrAcco02	39022212	39023330	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Acco02g3003	67	370	Receptor kinase-like Gene Family	AT5G07280	45.574	3.00e-74	248

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-Xb-1	Acco02g3003		Pkinase	1.7e-43	CL0016