LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Acco02g2954	ATGTCCTTCCGCGGTATAGTTCGTGATGTAAGGGATGGGTTTGGGAGCTTATCGAGACGGAGTTTTGAGGTGAGGCTTCCTGGCCATCATAGGAAGTCACAAAGCTCAGTACATGAAGTGCAGGATCAAGCTCCAGTTATACAGAACAGCCGTTGGGCTAGCCTTCCACCTGAGCTTCTTCGCGATGTTGTCAAAAGATTGGAAACAAGTGAGACTACATGGCCTGGTCGTAAACATGTAGTTGCTTGTGCTGGTGTGTGCAAGTCCTGGAGAGAAATGTGCAAAGAAATTGTGAGCAGTCCCGAGTTCTCTGGGAAAATTACTTTCCCTATTTCCCTAAAACAGCCTGGATTCAGGGATGGAACCATCCAGTGTTTCATCAAGAGGGACAAATCTAATTTGACGTACCACCTTTTCCTTTGCCTTAGCCCTGCACTGCTTGTTGAGAATGGAAAGTTTCTTTTATCGGCAAAAAGGACAAGAAGAACTACATGCACTGAGTATATTATATCAATGGACGCAGAAAACATATCAAGATCTAGTACTAGGTACATTGGAAAACTGAGGTCAAATTTTCTTGGTACCAAATTTATAATTTATGATACACAGCCTCCCTACAATAATTCTCAGCTGTCTCCACCTGGCCGAAGCCGTAGGTTTTATTCAAAAAGGGTTTCTCCAAAAGTCCCTAGCGGCAGCTACAATGTTGCACAAGTCTCTTATGAGCTTAATGTGCTAGGGACTAGGGGACCTCGGCGGATGCACTGCACCATGTACTCCATCCCCACATCATCTCTTGATCCCGGTGGCATTGTCCCAGGCCAACCTGAGCTTCTTCCCCGCTCCCTTGAGGATTCATTCAGAAGTATATCCTTCTCAAAATCAATTGACAATTCAACTGAGTTTAGCAGCTCGAGGTTCTCAGACATAATTGGTCCTGCTGGAAACGAAGAGGAAGACAAGGAGAGACCATTAGTCCTTAAGAACAAGGCACCAAGGTGGCATGAGCAGCTGCAATGTTGGTGCCTAAACTTCCGGGGTCGGGTGACAGTTGCATCTGTAAAAAATTTTCAGCTGGTCGCAGCAACTACTCCACCTGCACCCGGTGCTCTGGCACCAGCACAGCCATCACAGTCTGATCACGACAAGATTATTCTTCAGTTTGGCAAGGTTGGGAAGGATATGTTCACAATGGATTATAGATACCCCCTATCTGCGTTTCAGGCTTTTGCCATTTGCCTGACCAGCTTCGACACAAAACTGGCATGTGAATAG	1275	0.4604	MSFRGIVRDVRDGFGSLSRRSFEVRLPGHHRKSQSSVHEVQDQAPVIQNSRWASLPPELLRDVVKRLETSETTWPGRKHVVACAGVCKSWREMCKEIVSSPEFSGKITFPISLKQPGFRDGTIQCFIKRDKSNLTYHLFLCLSPALLVENGKFLLSAKRTRRTTCTEYIISMDAENISRSSTRYIGKLRSNFLGTKFIIYDTQPPYNNSQLSPPGRSRRFYSKRVSPKVPSGSYNVAQVSYELNVLGTRGPRRMHCTMYSIPTSSLDPGGIVPGQPELLPRSLEDSFRSISFSKSIDNSTEFSSSRFSDIIGPAGNEEEDKERPLVLKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVAATTPPAPGALAPAQPSQSDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLTSFDTKLACE	424

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Acco02g2954	424	Gene3D	-	47	100	-	-
	Acco02g2954	424	ProSitePatterns	Tub family signature 2.	409	424	IPR018066	-
	Acco02g2954	424	ProSitePatterns	Tub family signature 1.	345	358	IPR018066	-
	Acco02g2954	424	PRINTS	Tubby superfamily signature	233	260	IPR000007	-
	Acco02g2954	424	PRINTS	Tubby superfamily signature	327	344	IPR000007	-
	Acco02g2954	424	PRINTS	Tubby superfamily signature	345	361	IPR000007	-
	Acco02g2954	424	PRINTS	Tubby superfamily signature	184	208	IPR000007	-
	Acco02g2954	424	PRINTS	Tubby superfamily signature	381	400	IPR000007	-
	Acco02g2954	424	PRINTS	Tubby superfamily signature	168	184	IPR000007	-
	Acco02g2954	424	PRINTS	Tubby superfamily signature	402	424	IPR000007	-
	Acco02g2954	424	SUPERFAMILY	F-box domain	44	96	IPR036047	GO:0005515
	Acco02g2954	424	Pfam	Tub family	113	419	IPR000007	-
	Acco02g2954	424	PANTHER	TUBBY-RELATED	39	422	-	-
	Acco02g2954	424	FunFam	Tubby-like F-box protein	47	100	-	-
	Acco02g2954	424	CDD	F-box_AtTLP-like	52	96	-	-
	Acco02g2954	424	Gene3D	Tubby Protein; Chain A	110	424	IPR025659	-
	Acco02g2954	424	FunFam	Tubby-like F-box protein	109	424	-	-
	Acco02g2954	424	Pfam	F-box domain	52	99	IPR001810	GO:0005515
	Acco02g2954	424	SUPERFAMILY	Tubby C-terminal domain-like	101	424	IPR025659	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Acco02g2954	Acco-ChrAcco02	37022807	37025442	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Acco02g2954	1	424	TUB Transcription Factor Family	AT1G76900	68.627	0.0	603

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	TUB	Acco02g2954		Tub	4.5e-116	CL0395