Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g2929 ATGGCAGATCTTGCTAAGTACGGGAATGCCGACCGTGATATTGAACAGGCATTGATAGCTTTGAAAAAGGGTGCTCAGTTGCTTAAATATGGTCGCAAGGGAAGGCCCAAGTTTTGTCCATTTCGACTTTCCAATGATGAATCATCATTAGTTTGGATATCAAGTAGTGGAGAAAGACGTCTGAAGCTATCTTCTGTCTTGAGAATTATTCCTGGGCAAAGAACTGCTGTTTTCCAACGTTATTTGCGTCCTGAGAAGGATTATCTTTCTTTTTCACTTATTTACAACAACGGAAAGCGATCCCTTGACTTGATTTGCAAGGATAAAGCTGAGGCAGAAGTTTGGATTGCTGGTCTCAATTCACTGCTCTCTTCTGCTCAAGGTGGCCGGTCCAAAATTGATGGATGGAGTGATGGGGGCCTCTGTCTTGATGATAACAGGGAATTGAATTCAAATCGGCCAAGTGGAAGTTCAGTTGGTACTTCCCAAGATATTAGCTCTCCTGAAGTTTCTCTAAGTCTTAATTCTAATTCTCCTGCGAAGTCCTTTGTTCCTGAGAATACTTTTAATTCTGAAAGGTCACATGCACCATCTGATCAAACAAATATGCAAGTGAAAGGATCTGGTTCAGATGCTTTTCGTGTTAGTGTTTCAAGTGCCCCTAGTACATCTAGTCATGGGTCAGCACCTGATGACTGTGATGCCCTCGGGGATGTATACATATGGGGAGAGGTAATCTGTGAGAACATTGTGAAAGTTGGTGCTGATATAAATGCCAACTATTTTAGCTCAAGGGTGGATGTGCTTCTACCCAGACTGTTGGAGACCAATGTAGTTTTAGATGTACATCATATAGCATGTGGAGTTAAACATGCTGCTCTAGTCACAAGGCAAGGTGAAATTTTTACATGGGGCGAAGAATCTGGAGGACGCCTTGGCCATGGTGTTGAGAAGAATGTGCTTCAACCCCTTTTAGTTGAAGCATTGGCTTGTACAACTGTTGATTTTGTTGCCTGTGGTGAGTTCCACACCTGTGCTGTTACCATTGCTGGGGAATTATATACTTGGGGTGATGGTACTCATAATGCTGGACTTCTTGGTCATGGCACTGATATTACTCATTGGATACCAAAGAGAATTGCAGGTCCACTGGAGGGAGTTCAGGTTTCTTTAGTCTCTTGTGGTCCATGGCACACAGCCTTGGTGACTTCAAGTGGGCAACTTTTTACTTTTGGTGATGGAACTTTCGGTGTCTTGGGCCATGGAGATAGGGAAAATCATTCTTATCCTAGAGAAGTAGAATCCTTATCTGGCCTAAGGACGATAGCTGTTGCATGTGGTGTGTGGCATACTGCAGCTGTTGTAGAAGTTATAGTAACACAATCCAATGCTAGTGCATCATCAGGGAAATTGTTTACCTGGGGTGATGGAGACAAAAATCGCCTTGGACATGGGGATAAGGAAGCCCGACTGGAACCAACTTGTGTGCCTTCAATTATTGACTACAATTTTTATAAAATTGCTTGTGGACACAGCTTGACTGTTGGCTTGACGACGTCGGGACATGTTTTTACAATGGGTAGCACTGTATATGGTCAACTTGGGAATTCCCAGTCTGATGGAAAGGTGCCTTGCTTGGTTGAAGATAAGCTTGCTGGAGAATCTGTTGAAGAAATTGCATGTGGTGCATATCATGTTGCAGTTTTAACATCTAAAAATGAAGTTTATACATGGGGAAAGGGTGCAAATGGGAGGTTGGGTCATGGAGATATTGAAGACAGGAAAATACCAACTTTGGTTGAAGCTTTGAAGGATAGGCATGTGAAATATATTGCATGTGGTTCAAACTACTCTGCTGCAATATGCCTTCACAAATGGGTATCGGGTGCAGAACAGTCTCAGTGTTCTGCTTGTAGACAGGCATTTGGATTCACTCGGAAGAGGCACAATTGTTATAATTGTGGACTCGTACACTGCCATGCATGCAGTTCAAGGAAAGCACTAAGAGCAGCTTTGGCTCCTAATCCTGGCAAGCCATATCGAGTTTGTGATTCTTGTTATGCAAAACTAAGCAAGGTAGCTGAAGCTGGCAGTAATAATAGGAAGAATGTGATGCCACGTTTGTCTGGTGAAAACAAGGATAGGTTAGATAAGTCTGAGATAAGAGCATCCAAGGTGGTTCCTTCTAATATTGATTTGATAAAGCAGCTAGATAGTAAAGCAGCCAAACAGGGGAAGAAGGCTGATACATTTGCCCTAGTTCGCACCTTACAAGCACCTTCAATGCTGCAACTGAAGGATGTGGTCTTGTCTACTGCTGCTGATCTGAGACAAACAGCTCCAAGACCAGTTCTTGCACCATCTGGAGCAAGTTCCAGATCTGTATCCCCTTTCTCTAGACGACCAAGTCCTCCTCGTTCTGCTACACCTATTCCAACCACATCTGGACTTTCTTTCTCCAAAAGCATTGCTGACAGTTTAAATAAAACAAATGGACTTCTAAATCAAGAAGTGGCAAAGTTACGATCTCAGGTTGAGAGCTTGAGGCAAAGATGTGAACGACAAGAATTGGAGCTTCAAAGGTCAGCAAAGAAAACTCAGGAAGCTGTGGCACTTGCTGCTGAGGAGTCTGCTAAGTGTAAAGCTGCAAAAGAAGTTATAAAGTCACTTACAGCACAGCTCAAAGATCTGGCTGAGAGGCTCCCTTCTGGAGCTAATGATGCTGACAGCATAAGAACAGTTTACCTACCAAATGGTTTGGAGTCAAATGGCATCCACTCTCCTGACTCAAATGGGGAGCGCCATTCCCAAGTTGAGTCAGTCAGTGCCTCTAGCTTGGCCTCTGTAGGACTTGAATCATCTCGGTCAAATAGGCTCGAGGGAAATCTATCTGGAGCGTATGGAACTAATCTTTACCACCAAAACCGGCAGCCTGTGACCTCCAATGGCACCAATGAACCCTCAGACGTTAAATTGCCAAATGGTGGCATGACTCCCACACGCAACCATATGTCAGATGCCGTTGATAGTAGGGATTCAGGACATTTACAAGATGGAGAGGGTGGTTTGAGTTCAAAGGATGGCATGCTGGCTGCGAACAGTAATCAAATTGAGGCAGAGTGGAGTGAACAGTATGAACCTGGTGTGTATATAACACTCGTAGCCCTCAAGGATGGAACACGAGATCTAAAACGAGTGCGCTTCAGCCGGAGAAGATTTGGAGAGCATCAAGCAGAGACATGGTGGTCAGAGAATCGTGAGAAGGTATATGAAAGGTACAATGTTCGCAGCAGCACCGACAAATCTTCAGGCCAAGCAACTCGAAAAGCAGAAGGCGCTGCTTCCCCTGTCACCCAATCATAG 3363 0.4416 MADLAKYGNADRDIEQALIALKKGAQLLKYGRKGRPKFCPFRLSNDESSLVWISSSGERRLKLSSVLRIIPGQRTAVFQRYLRPEKDYLSFSLIYNNGKRSLDLICKDKAEAEVWIAGLNSLLSSAQGGRSKIDGWSDGGLCLDDNRELNSNRPSGSSVGTSQDISSPEVSLSLNSNSPAKSFVPENTFNSERSHAPSDQTNMQVKGSGSDAFRVSVSSAPSTSSHGSAPDDCDALGDVYIWGEVICENIVKVGADINANYFSSRVDVLLPRLLETNVVLDVHHIACGVKHAALVTRQGEIFTWGEESGGRLGHGVEKNVLQPLLVEALACTTVDFVACGEFHTCAVTIAGELYTWGDGTHNAGLLGHGTDITHWIPKRIAGPLEGVQVSLVSCGPWHTALVTSSGQLFTFGDGTFGVLGHGDRENHSYPREVESLSGLRTIAVACGVWHTAAVVEVIVTQSNASASSGKLFTWGDGDKNRLGHGDKEARLEPTCVPSIIDYNFYKIACGHSLTVGLTTSGHVFTMGSTVYGQLGNSQSDGKVPCLVEDKLAGESVEEIACGAYHVAVLTSKNEVYTWGKGANGRLGHGDIEDRKIPTLVEALKDRHVKYIACGSNYSAAICLHKWVSGAEQSQCSACRQAFGFTRKRHNCYNCGLVHCHACSSRKALRAALAPNPGKPYRVCDSCYAKLSKVAEAGSNNRKNVMPRLSGENKDRLDKSEIRASKVVPSNIDLIKQLDSKAAKQGKKADTFALVRTLQAPSMLQLKDVVLSTAADLRQTAPRPVLAPSGASSRSVSPFSRRPSPPRSATPIPTTSGLSFSKSIADSLNKTNGLLNQEVAKLRSQVESLRQRCERQELELQRSAKKTQEAVALAAEESAKCKAAKEVIKSLTAQLKDLAERLPSGANDADSIRTVYLPNGLESNGIHSPDSNGERHSQVESVSASSLASVGLESSRSNRLEGNLSGAYGTNLYHQNRQPVTSNGTNEPSDVKLPNGGMTPTRNHMSDAVDSRDSGHLQDGEGGLSSKDGMLAANSNQIEAEWSEQYEPGVYITLVALKDGTRDLKRVRFSRRRFGEHQAETWWSENREKVYERYNVRSSTDKSSGQATRKAEGAASPVTQS 1120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g2929 1120 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 444 454 IPR000408 -
Acco02g2929 1120 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 622 697 IPR013083 -
Acco02g2929 1120 Gene3D - 462 621 IPR009091 -
Acco02g2929 1120 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 285 295 IPR000408 -
Acco02g2929 1120 MobiDBLite consensus disorder prediction 1095 1120 - -
Acco02g2929 1120 FunFam Putative E3 ubiquitin-protein ligase HERC1 631 699 - -
Acco02g2929 1120 Pfam FYVE zinc finger 625 691 IPR000306 GO:0046872
Acco02g2929 1120 Pfam Transcription factor regulating root and shoot growth via Pin3 1038 1093 IPR013591 -
Acco02g2929 1120 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 58 897 - -
Acco02g2929 1120 MobiDBLite consensus disorder prediction 922 1028 - -
Acco02g2929 1120 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 351 405 IPR000408 -
Acco02g2929 1120 Gene3D - 189 461 IPR009091 -
Acco02g2929 1120 MobiDBLite consensus disorder prediction 147 230 - -
Acco02g2929 1120 SUPERFAMILY RCC1/BLIP-II 236 626 IPR009091 -
Acco02g2929 1120 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 521 572 IPR000408 -
Acco02g2929 1120 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 406 457 IPR000408 -
Acco02g2929 1120 MobiDBLite consensus disorder prediction 148 229 - -
Acco02g2929 1120 FunFam PH, RCC1 and FYVE domains-containing protein 1 459 630 - -
Acco02g2929 1120 PRINTS Chromosome condensation regulator RCC1 signature 408 422 IPR000408 -
Acco02g2929 1120 PRINTS Chromosome condensation regulator RCC1 signature 510 528 IPR000408 -
Acco02g2929 1120 PRINTS Chromosome condensation regulator RCC1 signature 568 589 IPR000408 -
Acco02g2929 1120 PRINTS Chromosome condensation regulator RCC1 signature 351 367 IPR000408 -
Acco02g2929 1120 PRINTS Chromosome condensation regulator RCC1 signature 301 317 IPR000408 -
Acco02g2929 1120 PRINTS Chromosome condensation regulator RCC1 signature 392 408 IPR000408 -
Acco02g2929 1120 Coils Coil 824 865 - -
Acco02g2929 1120 Gene3D - 13 131 IPR011993 -
Acco02g2929 1120 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 392 402 IPR000408 -
Acco02g2929 1120 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 629 691 IPR017455 -
Acco02g2929 1120 FunFam PH, RCC1 and FYVE domains-containing protein 1 208 458 - -
Acco02g2929 1120 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 469 520 IPR000408 -
Acco02g2929 1120 Pfam Regulator of chromosome condensation (RCC1) repeat 405 454 IPR000408 -
Acco02g2929 1120 Pfam Regulator of chromosome condensation (RCC1) repeat 299 347 IPR000408 -
Acco02g2929 1120 Pfam Regulator of chromosome condensation (RCC1) repeat 520 569 IPR000408 -
Acco02g2929 1120 Pfam Regulator of chromosome condensation (RCC1) repeat 468 515 IPR000408 -
Acco02g2929 1120 Pfam Regulator of chromosome condensation (RCC1) repeat 351 401 IPR000408 -
Acco02g2929 1120 Pfam Regulator of chromosome condensation (RCC1) repeat 574 621 IPR000408 -
Acco02g2929 1120 MobiDBLite consensus disorder prediction 1096 1120 - -
Acco02g2929 1120 CDD PH_PLC_plant-like 12 124 - -
Acco02g2929 1120 SUPERFAMILY FYVE/PHD zinc finger 625 697 IPR011011 -
Acco02g2929 1120 Pfam Transcription factor BRX N-terminal domain 875 907 IPR027988 -
Acco02g2929 1120 Pfam Pleckstrin homology domain 15 123 IPR001849 -
Acco02g2929 1120 ProSiteProfiles BRX domain profile. 1039 1094 IPR013591 -
Acco02g2929 1120 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 299 350 IPR000408 -
Acco02g2929 1120 MobiDBLite consensus disorder prediction 698 719 - -
Acco02g2929 1120 SUPERFAMILY PH domain-like 13 123 - -
Acco02g2929 1120 SMART fyve_4 623 692 IPR000306 GO:0046872
Acco02g2929 1120 MobiDBLite consensus disorder prediction 781 816 - -
Acco02g2929 1120 CDD FYVE_like_SF 634 687 - -
Acco02g2929 1120 MobiDBLite consensus disorder prediction 923 991 - -
Acco02g2929 1120 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 573 624 IPR000408 -
Acco02g2929 1120 Coils Coil 873 900 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g2929 Acco-ChrAcco02 35498253 35511966 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g2929 1040 1096 Major Intrinsic Protein MIP AT1G31880 54.386 1.60e-13 71.6