LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Acco02g2892	ATGAGTAAACTGGCAGAGGAAGGGTCCAAGAAAGCTGTTCTTGTGTTTGAGCAAGCATCAGTATCCTGTAATATTTGGTTCATTCACAAGGGCAACCTCATATATACAAGCGCAGATAGTAAAGATATATCTGAAATTGAGACTGCCCCATCATTGTTGTTGCTTAGTTCAAATGCAGGAGGCAAACAGTATGAGATCAGTTCTGAATGTACTCCTAGTTCCCAGAAATATTTAGATGCTGAAAAGATGGAAGGAATGCTTATAAATATTTGTTCCCATTGTTCCTTAGAATCAGTAAAATCAAGTACTAAGTTGACAGATTTGCTGTCTCTTGAGGTGGGAAGTGATGCACAGGATGACACGAGAGAGCATGATGGAAGACGAGAACTAGCTAATGTAGATGCTAGGAGCTTCAGATCAAAAGAACTTGTAGGGGCAGTGGAGAGAAGCAATATAGAAGACAACAGTACTGTGGAGGTGGAAGCATTAGAAAGCTTGTGTGCTAATGAGATAAGTAGAAGAAGAGAACTTGAAGAACTATATGCTAGGGAAAAGCTAGAGTTACAAAAAGTGAAAGATCAACAAGATGAAATAATGGGAAAACTACAAATGATCCAAGATCAAAATTCAGCACTTGACGGCCAAGTTGTTGAGTCCAAGCTTGTGGTAGCAGAGTTGGAGGAGAAAATTTTATCAGCAGTTGAACTCTTGATAAGCTTCAAAGACAGACGAGATAAGTTAAAGATCCAGCATTCAAATGCTGTAAGGGAATTGAACAAGTTGAGGAATTTTGTAAATGCAGATGCGGAATATCTTCATGGAACAAAATTTCCGACATTTTCATTCTTAGAGATTAATGAGGCAACTAATGATTTTGAACCATCCTGGAAGATTGGAGAGGGAAGGTATGGGAGTGTATACAAAGGATTGCTTCACAATATGCGAGTTGCCATAAGGATGTTGCCCTCTTATGGCTGTCAGAGCCTACTGGAGTTCCAACATCAGGTTGAGGTTTTGAGTAGGGTAAGACATCCAAACCTCGTAACACTGATTGGAAGCTGCCCAGAATCTAGGTCACTTGTCTATGATTACCTTAATAATGGCAGCCTTGAGGACCACCTTGCTCGCAAAGACAAGACTCCACTTCCTTGGCAAATTCGAATATCTGTTGCTGCTGACATATGCTCTGCTCTTATCTTCATTCATTCCTGTGAGCCTTGTATAATCCATGGGAATGTGAAGCCCAGTAAAATTCTGCTTGATGTAAACTTTGCGGTCAAACTATGTGATTTGGGCATTTCTTCTTTGGTCCAGTTCAGTGGGCATCCAGCTGACAGTGACAAAACAGTTGATAAACGAAATGAAAGTTTGGTGTATGCGGATCCAGAATTTTTAACCACTGGGAAGCTCACACCAGAATCTGATGTGTATTCGTTTGGAATCATATTGTTACAACTCTTTACTGGCAGACCACTTTCGGGAATAGTAAGGGATACAAAATGTGCATTGGAGAAGGAAAATCTTAAAGCGGTATTGGACATTTCCGCTGGAGAATGGCCGCTTTATCAAGTTGAACAGCTAGCATATTTGGCACTGAGGTGTTCTGAGAAGACTCAGCTGAACCAGCCTGACCTCTTGTCAGAAATCTGGAGTCTTCTTCGACCATTGCAAACTTCATGCAGTAACATGTCGCCATATTCAACTTCCAAGAAGCTTCAACGTCCTCCTTCTCACTTTGTCTGCCCCATATTTCAGGAGGTCATGAAGGATCCTTATATTGCTGCAGATGGCTTTACATATGAAGAAGACGCAATAAGAGGTTGGTTGGATAGTGGTCACAACACTTCACCAATGACAAACCTCAAGCTTGAACACACCAACCTAGTGCCTAATTATGCATTACTTAATGCGATTCAGGAGTGGCAGCACCTGCATTGA	1938	0.4118	MSKLAEEGSKKAVLVFEQASVSCNIWFIHKGNLIYTSADSKDISEIETAPSLLLLSSNAGGKQYEISSECTPSSQKYLDAEKMEGMLINICSHCSLESVKSSTKLTDLLSLEVGSDAQDDTREHDGRRELANVDARSFRSKELVGAVERSNIEDNSTVEVEALESLCANEISRRRELEELYAREKLELQKVKDQQDEIMGKLQMIQDQNSALDGQVVESKLVVAELEEKILSAVELLISFKDRRDKLKIQHSNAVRELNKLRNFVNADAEYLHGTKFPTFSFLEINEATNDFEPSWKIGEGRYGSVYKGLLHNMRVAIRMLPSYGCQSLLEFQHQVEVLSRVRHPNLVTLIGSCPESRSLVYDYLNNGSLEDHLARKDKTPLPWQIRISVAADICSALIFIHSCEPCIIHGNVKPSKILLDVNFAVKLCDLGISSLVQFSGHPADSDKTVDKRNESLVYADPEFLTTGKLTPESDVYSFGIILLQLFTGRPLSGIVRDTKCALEKENLKAVLDISAGEWPLYQVEQLAYLALRCSEKTQLNQPDLLSEIWSLLRPLQTSCSNMSPYSTSKKLQRPPSHFVCPIFQEVMKDPYIAADGFTYEEDAIRGWLDSGHNTSPMTNLKLEHTNLVPNYALLNAIQEWQHLH	645

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Acco02g2892	645	SMART	Ubox_2	578	641	IPR003613	GO:0004842\|GO:0016567
	Acco02g2892	645	Pfam	Protein tyrosine and serine/threonine kinase	297	498	IPR001245	GO:0004672\|GO:0006468
	Acco02g2892	645	SUPERFAMILY	Protein kinase-like (PK-like)	272	544	IPR011009	-
	Acco02g2892	645	ProSiteProfiles	U-box domain profile.	574	645	IPR003613	GO:0004842\|GO:0016567
	Acco02g2892	645	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	574	645	IPR013083	-
	Acco02g2892	645	Pfam	U-box domain	576	642	IPR003613	GO:0004842\|GO:0016567
	Acco02g2892	645	SUPERFAMILY	RING/U-box	566	642	-	-
	Acco02g2892	645	ProSiteProfiles	Protein kinase domain profile.	292	551	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Acco02g2892	645	CDD	RING-Ubox_WDSUB1-like	576	631	-	-
	Acco02g2892	645	Gene3D	Phosphorylase Kinase; domain 1	263	364	-	-
	Acco02g2892	645	PANTHER	OS02G0152300 PROTEIN	8	640	-	-
	Acco02g2892	645	Coils	Coil	160	194	-	-
	Acco02g2892	645	Gene3D	Transferase(Phosphotransferase) domain 1	365	562	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Acco02g2892	Acco-ChrAcco02	34077660	34098945	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Acco02g2892	3	643	U-box Gene Family	AT3G49060	45.481	0.0	535

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-IXb	Acco02g2892		PK_Tyr_Ser-Thr	8.2e-34	CL0016