Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g2871 ATGGTTTTTATGGCAGTCATTATTATTCATTTTGGAAAAGACAGCCAATTGCCAATGTTAAGTATTGTTAAATTTCGTGGAATCTTTGTTGCCGGACAAGCCAACTTTCCACCATCATTAATCCCATATGCTGCATTTAGAATTTGTCACTTTGACACTGAAGGGCAACAAAATGTCTTGGGCAAACATTTGAATTCGTCACCCACCAGACTGCAAAGCAGAGTTGGAATTTTTTGGGACTTAGACAACAAACCACCCAAGTCATTGCCACCTTATGAAGCTGCCACTAAGCTGAAAGCGGCTGCATCTCTCTTTGGCGTTGTTAAGCACATGGTGGCTTATGCAAATTGTCGTACTTTTAGCCATGTCCCTCAAAATGTTAGGGAACAAAGAAAAGAAAGGAAATTGTTAAATCATTTGGAGAACAAAGGCGTGATCAAGCCAGCTGAACCTTATCTTTGTCAGGTCTGTGGGAGAAAATTTTATAAAAATGAGAAGCTTATTAACCATTTTAACCAAATACATGAGCGTGAGCACATAAAAAGATTGAACACGATAGAGTCAGCAAAGGGGAACAGGAGGGTGAAGTTGGTTGCTAAGTTTTCAATGAAAATGGAGAAGTATAAGAAGGCAGCAAGGAGCATTTTGACTCCCAAAGTAGGGTATGGTTTGGCAGATGAGATAAAACATGCAGGGTTTTGGGTTCGGACTGTACTGGATAAGCCACAAGCTGCAGATATTGCATTGAAAGGTCACATAGTAGATATGATCGATAATAAGCTGGTTGAATGTGTGTTTCTTGTTTCAGACGATTCTGATTTTGTTGATGTATTAAAGGAGGCAAAGCTACGATGTCTCAAGACAGTTGTCGTTGGGGATACTAATGATGGGGCATTGAAGAGGACTGCTGATGGTTCCTTTTCTTGGGAGGAAATTCTGATGGGGAAGGCGAAGAAGGAGGCAGTATCAGTTGTTGAAAAGTGGAAGGATCGTGATATCTTGAAAAGATTAGAGTGGACATACAATCCAGCGTTGGAGAAAAATAAATACAGTCCAGATGATATGGTTACTGAGGCTAATTTGGATGAAGATATTAGTGATAGCTGTGATGAAGTTGATGGTGCCTATAGCTATAAAGAAGACTCAAATGCTTGGTGGGAATTGGATACTGATGATGATTCCATAAATAAACAATCAGGAAAATAA 1206 0.3955 MVFMAVIIIHFGKDSQLPMLSIVKFRGIFVAGQANFPPSLIPYAAFRICHFDTEGQQNVLGKHLNSSPTRLQSRVGIFWDLDNKPPKSLPPYEAATKLKAAASLFGVVKHMVAYANCRTFSHVPQNVREQRKERKLLNHLENKGVIKPAEPYLCQVCGRKFYKNEKLINHFNQIHEREHIKRLNTIESAKGNRRVKLVAKFSMKMEKYKKAARSILTPKVGYGLADEIKHAGFWVRTVLDKPQAADIALKGHIVDMIDNKLVECVFLVSDDSDFVDVLKEAKLRCLKTVVVGDTNDGALKRTADGSFSWEEILMGKAKKEAVSVVEKWKDRDILKRLEWTYNPALEKNKYSPDDMVTEANLDEDISDSCDEVDGAYSYKEDSNAWWELDTDDDSINKQSGK 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g2871 401 Pfam NYN domain 226 307 IPR021139 GO:0004540
Acco02g2871 401 ProSitePatterns Zinc finger C2H2 type domain signature. 154 175 IPR013087 -
Acco02g2871 401 Gene3D - 68 313 - -
Acco02g2871 401 PANTHER C2H2-TYPE DOMAIN-CONTAINING PROTEIN 66 397 - -
Acco02g2871 401 ProSiteProfiles Zinc finger C2H2 type domain profile. 152 180 IPR013087 -
Acco02g2871 401 SUPERFAMILY beta-beta-alpha zinc fingers 151 176 IPR036236 -
Acco02g2871 401 Gene3D Classic Zinc Finger 152 178 - -
Acco02g2871 401 CDD PIN_LabA-like 162 293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g2871 Acco-ChrAcco02 33443675 33444880 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g2871 74 392 C2H2 Transcription Factor Family AT4G12240 62.539 9.69e-144 411
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Acco02g2871 NYN 4.9e-06 CL0280