Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g2811 ATGTCCTTCTCGCACACATGGCTTCCACTTTCCAATCCTGAAATGACAACACATAAAACTTTCCCTTCTTTTCTCTCTCTTTCTGTGACAATAATTGGGAAGCTGAAGGAGAAGAAGATGGGAAGAGGTAGGGTTGAGCTGAGGCGTATTGAGAACAAAATCAGCCGTCAAGTGACATTTTCAAAGAGGCGAAGTGGACTGTTCAAGAAGGCTCAAGAAATCTCTGTGCTCTGTGATGCTCAAGTTGCTCTTATAATCTTCTCCACCAAAGGCAAGCTCTTTGAGTTCTCCTCTGATTCCAGCTTGGATGGCATTCTGGAACGATATGAGAGACAAACGCACACTGAACAACTTGATGAAGTTAACAATAATGAATCTCAGGGAAACTTGTCCTTGGAATTCTACAAACTTAACACCAAGGCTAAAATCTTGGAGAAGAACATAAGGAACTATGGAGGACATGATCTTGATGTCTTGAGTTTGAGGGAGCTTCAGAACTTAGAAAACCAGATCGACAAAGCTATAAAGCGTATTCGAACAAGAAAGAACCAACTGATGAATGAATCCATCTCGGAGCATCAGAAGAAGGCGAGGACATTGCAGGAGCAAAACAACATACTAGCAAAGAAGGTGAAGGAGAAAGAGAAGACACTGACTGAAAATCCACTGAAGGAAAAGTACCCTCAAGGACAAAATTTATCTGGCTTCCATGCGCCTGCACCACAGCGACAACTTCCTACACTAACTCTTGGTGCGAGTTTACAAGGAAGAGAAGAGGGGGAAGAGGGGGAAGCTGAACAGACGGCACCCAGAAGCAGCGCTATTATGCCACCATGGATGTTGCATCACTTGATCAGATAG 861 0.4367 MSFSHTWLPLSNPEMTTHKTFPSFLSLSVTIIGKLKEKKMGRGRVELRRIENKISRQVTFSKRRSGLFKKAQEISVLCDAQVALIIFSTKGKLFEFSSDSSLDGILERYERQTHTEQLDEVNNNESQGNLSLEFYKLNTKAKILEKNIRNYGGHDLDVLSLRELQNLENQIDKAIKRIRTRKNQLMNESISEHQKKARTLQEQNNILAKKVKEKEKTLTENPLKEKYPQGQNLSGFHAPAPQRQLPTLTLGASLQGREEGEEGEAEQTAPRSSAIMPPWMLHHLIR 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g2811 286 Gene3D - 52 125 IPR036879 GO:0003677|GO:0046983
Acco02g2811 286 ProSiteProfiles MADS-box domain profile. 40 100 IPR002100 GO:0003677|GO:0046983
Acco02g2811 286 CDD MADS_MEF2_like 41 114 IPR033896 GO:0000977|GO:0045944
Acco02g2811 286 MobiDBLite consensus disorder prediction 213 278 - -
Acco02g2811 286 SMART madsneu2 40 99 IPR002100 GO:0003677|GO:0046983
Acco02g2811 286 Pfam K-box region 124 211 IPR002487 GO:0003700|GO:0005634|GO:0006355
Acco02g2811 286 SUPERFAMILY SRF-like 41 125 IPR036879 GO:0003677|GO:0046983
Acco02g2811 286 Coils Coil 161 217 - -
Acco02g2811 286 ProSiteProfiles K-box domain profile. 127 217 IPR002487 GO:0003700|GO:0005634|GO:0006355
Acco02g2811 286 FunFam MADS-box transcription factor MADS-MC 52 125 - -
Acco02g2811 286 ProSitePatterns MADS-box domain signature. 42 96 IPR002100 GO:0003677|GO:0046983
Acco02g2811 286 PRINTS MADS domain signature 62 77 IPR002100 GO:0003677|GO:0046983
Acco02g2811 286 PRINTS MADS domain signature 77 98 IPR002100 GO:0003677|GO:0046983
Acco02g2811 286 PRINTS MADS domain signature 42 62 IPR002100 GO:0003677|GO:0046983
Acco02g2811 286 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 49 96 IPR002100 GO:0003677|GO:0046983
Acco02g2811 286 PANTHER SERUM RESPONSE FACTOR HOMOLOG 40 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g2811 Acco-ChrAcco02 31457494 31478103 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g2811 40 252 MADS-box Gene Family AT1G26310 53.670 1.50e-68 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Acco02g2811 K-box 4e-21 No_clan