Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Acco02g2721 | ATGATCAAGAGAATCACACTCACACACATCCTCGTCTTCTTCCTTCGATCGGCGGCCGTCGTCGATGCCCAGACAAGTTTACCCCACAACAGGGATCCATCTTTCGATCCTGTGGTTGTGGCCCTCGTTTGCGTCTTCTTGTTCGTCGCCTGCTGCTCCATCATCGTCCGCCACTGCTCCAACGTGACCCTCGCCGCCGGTGCCACCACTAATTGTTCGTCAAGTGGTCCTCAAGGTATCGACCCAGAATTACTGAAAACCTTCCCCATCCTCGTATACTCCGCCGTGAAACACCTCAAATTTGGGGAAGCCGCGAACGAATGTGCGGTGTGCTTGAGCGAATTCGATCAACACGATACGCTCCGATTGCTTCCGAAATGTAGCCATTTCTTTCATCCTCAGTGCATTGATGCCTGGTTGGCCTCCCACGTGACATGCCCTGTGTGTCGCTCGAGGCTGAAGCCGGCGGAGGAACATGAAGGAGGTGGAAACGAAGTCGTAATAGTAATTCCGGATGAGGTGAATGCTCACCATGTGTTTGATGAAAGTTCTGAGAGTAGAACGGAGCTTAATTCAGGAGACCTAAGAAATTTGGTGAGGTGTCATTCAACGGGTCACTCCCTGGGTTTTGGTGAAATTGGAGGGAAGAACACGGAGAGGTTCACTGTTAAGAAGTTGGAGGAGGAAAACAAAGAGATTAAGATCAATCACGGAGGAATGCGGCGGTCCGCGAGCTACGATGTGATCCGTGGACGGCCGGGTGAACAGAAAAGCAGAGAGCATTAA | 786 | 0.5153 | MIKRITLTHILVFFLRSAAVVDAQTSLPHNRDPSFDPVVVALVCVFLFVACCSIIVRHCSNVTLAAGATTNCSSSGPQGIDPELLKTFPILVYSAVKHLKFGEAANECAVCLSEFDQHDTLRLLPKCSHFFHPQCIDAWLASHVTCPVCRSRLKPAEEHEGGGNEVVIVIPDEVNAHHVFDESSESRTELNSGDLRNLVRCHSTGHSLGFGEIGGKNTERFTVKKLEEENKEIKINHGGMRRSASYDVIRGRPGEQKSREH | 261 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Acco02g2721 | 261 | SMART | ring_2 | 108 | 149 | IPR001841 | - | |
| Acco02g2721 | 261 | MobiDBLite | consensus disorder prediction | 237 | 261 | - | - | |
| Acco02g2721 | 261 | ProSiteProfiles | Zinc finger RING-type profile. | 108 | 150 | IPR001841 | - | |
| Acco02g2721 | 261 | SUPERFAMILY | RING/U-box | 107 | 162 | - | - | |
| Acco02g2721 | 261 | PANTHER | RING FINGER DOMAIN-CONTAINING | 29 | 153 | - | - | |
| Acco02g2721 | 261 | FunFam | E3 ubiquitin-protein ligase ATL6 | 68 | 156 | - | - | |
| Acco02g2721 | 261 | CDD | RING-H2_EL5-like | 107 | 150 | - | - | |
| Acco02g2721 | 261 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 84 | 159 | IPR013083 | - | |
| Acco02g2721 | 261 | Pfam | Ring finger domain | 106 | 150 | IPR001841 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Acco02g2721 | Acco-ChrAcco02 | 27944671 | 27945456 | Dispersed/Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Acco02g2721 | 7 | 252 | Rapid Response to Elicitors | AT3G05200 | 36.426 | 1.61e-41 | 145 |