Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g2719 ATGATAAAGAGAATCACACCCTCACACATCTTCGTCTTCTTGCTTCTCTCGCCGACGGTAGGCGCCCAGTCAATTTCGGCACCGGCGGCTTCTCCTAATGCTCCTCTTCTTTCTTACCATGTATCGTTCAGTCCGGTGATTTTTACCCTCATTTTCGCCTTCTTCTTCGTCGGCTGCTTCGCCATCTACCTTCACCACCGCTCCTACCTGGAACTCACCGCCGGAGACTCAACTGGCGTCACAGAAAACTGTTCTCCAAGTGCATCTCAAGGTATCGACCCAAAATTACTCGACTCCTTCCCCACCATCGTGTTTTCCGCTGTGAAAAACCTCAAATTTGGGAAAGCCACCGCCGCGTCGGAGTGTGCCGTGTGCTTGGCCGAGTTCGACGACCATGATAAGATCCGATTGCTTCCGAAATGTAACCACGTGTTTCACCTTCAATGTATCGACGCCTGGTTGGCCTCCCACGTGACTTGCCCCGTTTGTCGTTCAAGGCTGAATCAGGCCGAGGAGCACCGCCGAGATGAAAACGACGTCGTGATTGTAATTCCGAATGAGGTATAA 567 0.5185 MIKRITPSHIFVFLLLSPTVGAQSISAPAASPNAPLLSYHVSFSPVIFTLIFAFFFVGCFAIYLHHRSYLELTAGDSTGVTENCSPSASQGIDPKLLDSFPTIVFSAVKNLKFGKATAASECAVCLAEFDDHDKIRLLPKCNHVFHLQCIDAWLASHVTCPVCRSRLNQAEEHRRDENDVVIVIPNEV 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g2719 188 Pfam Ring finger domain 121 164 IPR001841 -
Acco02g2719 188 SMART ring_2 122 163 IPR001841 -
Acco02g2719 188 FunFam E3 ubiquitin-protein ligase ATL6 81 170 - -
Acco02g2719 188 CDD RING-H2_EL5-like 121 164 - -
Acco02g2719 188 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 95 175 IPR013083 -
Acco02g2719 188 ProSiteProfiles Zinc finger RING-type profile. 122 164 IPR001841 -
Acco02g2719 188 SUPERFAMILY RING/U-box 121 180 - -
Acco02g2719 188 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 28 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g2719 Acco-ChrAcco02 27911539 27912105 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g2719 10 169 Rapid Response to Elicitors AT3G05200 41.317 5.50e-34 122