Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g2709 ATGGAGGAGCGCTGTATTCAGAATCCTTCAGACATGATTGATGAAGCTAGAGATCAAATTGAACACCACTTCCAAGTACCTAAAAATGAAGTAGAAAATGAAGAAGATGGATCATCTGAAGAAGTAGGAGAAGACCCTGTTGAAGAAGTTGAGCTAAAGCAGCTAGAAGAAACAACTCCTGATGGGAATGATCACAAATCAGGAGCTGTTAAATCTAATGATAAGAAGAGATGTCTGAATGCTGCATCTGGTGAATTAACTGCACTGCAATGCTATCAGTCACAAAAGAAGTGCAAGCAAGTGGGATCTTCTGGTTTGAAAGTAGAATCTGGACCTCCAGACAGCGACACTGTCACTGCAGAGACATCTATTGATAATTCTACTCCCAAAGAGGGTACTGGAAGTTCTGAAAAACGAAGCCGTAGCAGATGGGAACCACAGTCTGAGGATGATGGTGTAGAAGACAATCAGACTTGCAAGAGGAAGAAAACCAGGTGGTCCAATGAGGACACTCAACTAAAAATGCTGGGGCCACTTCAGCTGCCTGATTTCACAAAAGATTTTCTGGTTGGATATGAGAATAATCCTGAAATTAAAGGGCTGAAAGCTGAGCTTGTTGACATTAATAGAAGATTGCAAGGACCTCTTCACGATGATAAGCTTGAGGAGGAAAGATCTCCTTCACCAGAACCAATATATGATAACGTTGGCAACAGAATAAATACAAGAGAAGCAAGACTTCGCCAGAAACTTGTCCAGAAACGTCAAGATATCATATCAAAATTGATCAAATCAAACCAAATTTTTAGCACTCCACCTAGTTACAAGCCTCCAAAGCTCTTCAAAAAACTTTACATACCAGTCAAAGAATATCCAGAGTACAATTTTGTCGGCATTTTAATTGGTCCTCGTGGAAATACACTGAAGAGAATGGAAAGTGAAACTGGGGCCAAGATTCATATAAGAGGAAAAGGATGCACAAAAACACCCAACAGATCTGCCTCTTCTAAAGAGGACTTACATGTGTACATAGAAGCAGAAAACAAAAATTCTCTGGATGTAGCTGTTGCGATGGTTGCAAAATTGCTAATCCCTGTTGAAGGAAGAAATGAGCACAAGGAGGCTCAATTAAAGGAGCTGGCCAAGCTGAAAGGAACAGCTAGGGATGAAAATGTGTGCTTTGTTTGTGGTGACCAGGGACATCTGTCATATGCCTGCCCTGACCTTCAATCAACTTTCAAAGCGAACCCAAGGGGTACATGTTTAAGTGCCACTCCCTTGAATGTGATGTCTCCACAGAATGACTCAGCGCAGGGTTCTGGGTTTGGTTTTAGTTCCAGTTCAACAGAGAGTACACAACAGCAGAGGTCTGAAAAGAAATCATTGATGAATAATATTTACGTTGGCAATCTGCCTCAAGAGATTGATGATAATAGATTATCTGAGCTGTTTTCTCCATTTGGTAAGATCCTTGAAGCCAAAATAATGAAGGATCCGAGAACTGGAATTAGTAGGCAGGTTGGTTTTATAGAGTTTGACAATGCCATGGATGCACAAGCAGCTGTAACTCGTATGAACGGTTTTAGAATGGATGGGGGGAGATTTTTGAACGTAATGATAGCTAGGCTTTTGTCATATACTGAATGTTTAAGCTTGAACCTTGTTCCAAAGCGCTCTGGTCCTGCAGGTATATCCCAAAGTGTTAGAAGCCAAAATGATCGGTCTCGCCCTCGCCCATTACATGTTATGCTGCCAGAACATCCAACTTCCTTTCTCAACAGCAGTGGCAGGAATCTGTTTTCTCCTCCAAGCTGCTGCTCAAGCACTTCTGATCCCAGCAATTCTGGCAAAATGCATTTCTCACGAAACTTCTCAGATCAAAGCGTTTCGATATCTGGTAGTTCAATTTCAGAGACTCCTGGCTCCCAATATCTGTCTTATTCTGTGACGCCGCCTCTCGGTAAAGCTGCACTGCCCAATCCTGATCACAGATCAGAAGATGTGAAGTCTTTCCCTTCTTCATTGCAGAGAAGGTATTTCAGGGAACTTAATTGA 2055 0.419 MEERCIQNPSDMIDEARDQIEHHFQVPKNEVENEEDGSSEEVGEDPVEEVELKQLEETTPDGNDHKSGAVKSNDKKRCLNAASGELTALQCYQSQKKCKQVGSSGLKVESGPPDSDTVTAETSIDNSTPKEGTGSSEKRSRSRWEPQSEDDGVEDNQTCKRKKTRWSNEDTQLKMLGPLQLPDFTKDFLVGYENNPEIKGLKAELVDINRRLQGPLHDDKLEEERSPSPEPIYDNVGNRINTREARLRQKLVQKRQDIISKLIKSNQIFSTPPSYKPPKLFKKLYIPVKEYPEYNFVGILIGPRGNTLKRMESETGAKIHIRGKGCTKTPNRSASSKEDLHVYIEAENKNSLDVAVAMVAKLLIPVEGRNEHKEAQLKELAKLKGTARDENVCFVCGDQGHLSYACPDLQSTFKANPRGTCLSATPLNVMSPQNDSAQGSGFGFSSSSTESTQQQRSEKKSLMNNIYVGNLPQEIDDNRLSELFSPFGKILEAKIMKDPRTGISRQVGFIEFDNAMDAQAAVTRMNGFRMDGGRFLNVMIARLLSYTECLSLNLVPKRSGPAGISQSVRSQNDRSRPRPLHVMLPEHPTSFLNSSGRNLFSPPSCCSSTSDPSNSGKMHFSRNFSDQSVSISGSSISETPGSQYLSYSVTPPLGKAALPNPDHRSEDVKSFPSSLQRRYFRELN 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g2709 684 ProSiteProfiles Type-1 KH domain profile. 295 359 - -
Acco02g2709 684 PANTHER RNA-BINDING PROTEIN RELATED 129 568 IPR045071 -
Acco02g2709 684 SUPERFAMILY RNA-binding domain, RBD 449 542 IPR035979 GO:0003676
Acco02g2709 684 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 464 543 IPR000504 GO:0003723
Acco02g2709 684 Pfam KH domain 295 359 IPR004088 GO:0003723
Acco02g2709 684 MobiDBLite consensus disorder prediction 217 236 - -
Acco02g2709 684 Coils Coil 370 390 - -
Acco02g2709 684 MobiDBLite consensus disorder prediction 101 166 - -
Acco02g2709 684 Gene3D - 430 544 IPR012677 -
Acco02g2709 684 MobiDBLite consensus disorder prediction 48 73 - -
Acco02g2709 684 Pfam Splicing factor 1 helix-hairpin domain 162 276 IPR032570 -
Acco02g2709 684 MobiDBLite consensus disorder prediction 26 76 - -
Acco02g2709 684 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 466 534 IPR000504 GO:0003723
Acco02g2709 684 Gene3D - 195 277 IPR047086 -
Acco02g2709 684 SMART kh_6 280 364 IPR004087 GO:0003676
Acco02g2709 684 Gene3D K Homology domain, type 1 278 392 IPR036612 GO:0003723
Acco02g2709 684 MobiDBLite consensus disorder prediction 631 673 - -
Acco02g2709 684 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 280 390 IPR036612 GO:0003723
Acco02g2709 684 MobiDBLite consensus disorder prediction 631 649 - -
Acco02g2709 684 MobiDBLite consensus disorder prediction 432 459 - -
Acco02g2709 684 SMART rrm1_1 465 539 IPR000504 GO:0003723
Acco02g2709 684 SUPERFAMILY Retrovirus zinc finger-like domains 385 412 IPR036875 GO:0003676|GO:0008270
Acco02g2709 684 MobiDBLite consensus disorder prediction 559 588 - -
Acco02g2709 684 MobiDBLite consensus disorder prediction 602 621 - -
Acco02g2709 684 ProSiteProfiles Zinc finger CCHC-type profile. 393 408 IPR001878 GO:0003676|GO:0008270
Acco02g2709 684 MobiDBLite consensus disorder prediction 132 166 - -
Acco02g2709 684 MobiDBLite consensus disorder prediction 115 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g2709 Acco-ChrAcco02 27799313 27801367 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g2709 457 531 Eukaryotic Initiation Factors Gene Family AT1G49760 40.000 7.58e-10 60.1