Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g2673 ATGGGCTCTTCAATTTTCTACTCTCCTTCTCCCACTCGCTGCTACTCTCTCACACCAACACTTTCTCTCTCTTCTTTCTCTCCCGTTCTTCTCCAACTACCCCATTTTCCCTCTTCTTCCCTCTCCCTGCGAAGCAGAACTCTGTCGACGACTATTACAACCCCATTTGCCTATGTGACTGGACCCGCATCCGACCCGATTTTCAGTGAATGCGACCCTAAGATAGATGGGTCAGATCCCCGGCCGGAGAAAGTCCGGCCGCCCACCGTCATTAGCTGGGGGCTCCTCTGGATGCTTTTGATGAAACACAAATTTCGGCTTGTGGTTTCACTTGTGACTCTAATTTGTTGCACCACTTGTACTCTTTCTATGCCCCTATTTTCTGGTCAATTTTTTGAGGTTCTAATTGGGGCAAGACCTGAACCATTATGGAGGCTGCTTAGTAAGGTTGGAATGCTGTATGCCCTTGAGCCGATTTTAACTATTACTTTTGTTACCAACATGAACATAATGTGGGAGAAGATTATGTCAACACTAAGAGCTCAGATCTTTGGAAGGATATTGATGCAAAAGGTGGAATTTTTTGACAGATACAAGGTTGGTGAACTGACCGGTTTGCTAACATCCGATTTGGGTTCTCTTAAAGATATTGTGAGTGAAAATGTTGCAAGGGATCGTGGATTCAGGGCATTATCTGAGGTCATTGGAACAATATGCGTACTTTTTGCTTTGTCGCCTCAACTTGCTCCAATTTTGGGGATCCTAATGCTCACAGTTTCTGTTTCAGTTGCTGTCTACAAGAGATCAACTCTGCCGGTTTTTAAAGCATATGGGTTGGTCCAAGCATCCATATCTGATTGTGTCGCAGAAACGTTTTCTGCTATCCGTACAGTAAGATCCTTTGGTGGAGAGAAACGCCAAATGTTTACATTTGCTAACCAGGTTCTTTCGTACCAATCCAGCGGGATAAAGCTTGCCACTTATAAATCTCTAAATGAGTCCATGACTAGAGTTGCTGTTTATGTTTCTTTGTTGTCTTTATATATCCTTGGAGGAAACAAAGTTAAAGCGGGTGAACTCTCTGTTGGAACTGTGGCGTCTTTTATTGGTTACACTTTTACATTAACTTTTGCTGTTCAAGGAATGGTTAATACTTTTGGAGATCTACGTGGAGCTATTGCTGCTGTTGAGAGGATCAACAATGTTTTCTCTGAGGTTCAAATTGATGAAGCCCTTGCTTATGGCTTAGAAAGAGAACTGAAACAGAGAGAACTTAATGATGATAACTATAAACTGTTCTTCTCTGACAACTATACTGAGAAAACCCAACAAAAATACTCGCATTACATGTCAGCATTGAAATCATCAAGCAATTTGTACAGCTTAGCTTGGTCTGGTGATGTTTGTCTTCAAGATGTATATTTCTCTTATCCTTTAAGGCCAGATGTGGAAGTCTTAAGTGGCTTAAATTTAACTCTAAAATGTGGAACTATAACTGCATTGGTGGGTCCTAGTGGTGCAGGAAAAAGTACAATAGTACAGCTTTTGTCTCGGTTTTATGAGCCAACAAGAGGTCATATAACAGTTGCCGGAGAGGATGTTCGAACATTTGACAAGAGTGAATGGGCTCGGGCTATCTCTATTGTAAATCAAGAACCTGTTCTGTTTTCGGTGTCTGTTGGAGAAAATATTGCATATGGGCTTCCAGATGATGATGTTTCTAAAGAAGATGTGATCAAGGCAGCGAAAGCTGCAAATGCTCATGACTTCATACTTTCACTTCCACAGGGCTATGATACACATGTTGGTGAGCGGGGAGGCCTATTTAGTGGGGGACAGAGGCAGAGAATTGCTATTGCACGAGCACTCTTAAAGAATGCCCCAATCCTTATACTTGATGAGGCCACCAGTGCCTTAGATGCGGCAAGTGAGAGGCTGGTCCAAGATGCTCTCAACCATTTGATGAAGGGGAGGACAACATTAGTGGTAGCTCACCGATTGAGCACAGTTCAAAATGCCCATCAAATTGCACTCTGTTCTGGTGGCAAAATTGCAGAACTAGGAACACACCATGAGTTGCTGGCTAAGAAGGGCCAATATGCTTCACTGGTTGGTACTCAAAGGCTTGCATTTGAATGA 2139 0.4278 MGSSIFYSPSPTRCYSLTPTLSLSSFSPVLLQLPHFPSSSLSLRSRTLSTTITTPFAYVTGPASDPIFSECDPKIDGSDPRPEKVRPPTVISWGLLWMLLMKHKFRLVVSLVTLICCTTCTLSMPLFSGQFFEVLIGARPEPLWRLLSKVGMLYALEPILTITFVTNMNIMWEKIMSTLRAQIFGRILMQKVEFFDRYKVGELTGLLTSDLGSLKDIVSENVARDRGFRALSEVIGTICVLFALSPQLAPILGILMLTVSVSVAVYKRSTLPVFKAYGLVQASISDCVAETFSAIRTVRSFGGEKRQMFTFANQVLSYQSSGIKLATYKSLNESMTRVAVYVSLLSLYILGGNKVKAGELSVGTVASFIGYTFTLTFAVQGMVNTFGDLRGAIAAVERINNVFSEVQIDEALAYGLERELKQRELNDDNYKLFFSDNYTEKTQQKYSHYMSALKSSSNLYSLAWSGDVCLQDVYFSYPLRPDVEVLSGLNLTLKCGTITALVGPSGAGKSTIVQLLSRFYEPTRGHITVAGEDVRTFDKSEWARAISIVNQEPVLFSVSVGENIAYGLPDDDVSKEDVIKAAKAANAHDFILSLPQGYDTHVGERGGLFSGGQRQRIAIARALLKNAPILILDEATSALDAASERLVQDALNHLMKGRTTLVVAHRLSTVQNAHQIALCSGGKIAELGTHHELLAKKGQYASLVGTQRLAFE 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g2673 712 ProSitePatterns ABC transporters family signature. 609 623 IPR017871 GO:0005524|GO:0016887
Acco02g2673 712 SMART AAA_5 495 689 IPR003593 GO:0016887
Acco02g2673 712 Pfam ABC transporter transmembrane region 108 378 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Acco02g2673 712 Pfam ABC transporter 486 637 IPR003439 GO:0005524
Acco02g2673 712 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 459 707 IPR027417 -
Acco02g2673 712 SUPERFAMILY ABC transporter transmembrane region 96 404 IPR036640 GO:0005524|GO:0016020
Acco02g2673 712 FunFam ATP-binding cassette sub-family B member 8, mitochondrial 466 710 - -
Acco02g2673 712 Gene3D - 466 709 IPR027417 -
Acco02g2673 712 CDD ABC_6TM_TAP_ABCB8_10_like 111 399 - -
Acco02g2673 712 Gene3D ABC transporter type 1, transmembrane domain 81 407 IPR036640 GO:0005524|GO:0016020
Acco02g2673 712 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 83 710 IPR039421 -
Acco02g2673 712 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 108 391 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Acco02g2673 712 CDD ABC_MTABC3_MDL1_MDL2 470 707 - -
Acco02g2673 712 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 468 706 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g2673 Acco-ChrAcco02 26739512 26745733 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g2673 465 712 Calmodulin-binding Proteins AT2G36910 52.988 7.86e-75 261