LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Acco02g2649	ATGTCTAACTTCTCTATCTCCCATTATCGTCTTTTTCAAAAGTTGAAGTTTCTGTGGCCTTGGAATAAAGAGCTGGAGAGAACAGAATCTAAAACTTCATTTTCCGGCTTCCGCGGTTGGAGTGAGATGGGAAGAGGGAAGATACAGATAAAAAGAATAGAAGAAGCAAGTAGCAGGCAAGTGACGTTTTCAAAGAGAAGAAAAGGGCTTATGAAGAAAGCCTATGAGCTATCAGTTCTGTGTGAGGCACAAGTAGCTGTGATTGTCTTTTCTCAAAAAGGCGCTCTCTCTGAGTTCTTAAGCTCTGAGTACGTTCTAAATCCTTCCAATATTCTGCTGTCTACTTTCCCTTATTAA	357	0.4034	MSNFSISHYRLFQKLKFLWPWNKELERTESKTSFSGFRGWSEMGRGKIQIKRIEEASSRQVTFSKRRKGLMKKAYELSVLCEAQVAVIVFSQKGALSEFLSSEYVLNPSNILLSTFPY	118

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Acco02g2649	118	Gene3D	-	56	111	IPR036879	GO:0003677\|GO:0046983
	Acco02g2649	118	PRINTS	MADS domain signature	80	101	IPR002100	GO:0003677\|GO:0046983
	Acco02g2649	118	PRINTS	MADS domain signature	65	80	IPR002100	GO:0003677\|GO:0046983
	Acco02g2649	118	PRINTS	MADS domain signature	45	65	IPR002100	GO:0003677\|GO:0046983
	Acco02g2649	118	ProSiteProfiles	MADS-box domain profile.	43	103	IPR002100	GO:0003677\|GO:0046983
	Acco02g2649	118	SMART	madsneu2	43	102	IPR002100	GO:0003677\|GO:0046983
	Acco02g2649	118	PANTHER	SERUM RESPONSE FACTOR HOMOLOG	43	102	-	-
	Acco02g2649	118	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	52	99	IPR002100	GO:0003677\|GO:0046983
	Acco02g2649	118	SUPERFAMILY	SRF-like	43	103	IPR036879	GO:0003677\|GO:0046983
	Acco02g2649	118	CDD	MADS_MEF2_like	44	102	IPR033896	GO:0000977\|GO:0045944

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Acco02g2649	Acco-ChrAcco02	26107893	26108878	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Acco02g2649	43	103	MADS-box Gene Family	AT5G62165	70.492	8.34e-26	92.8

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-M-type	Acco02g2649		SRF-TF	2.3e-24	No_clan