Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g2641 ATGCTTTCTTTCTACTTTTACCTCTTCCTTGGGGGGCGGTGGTGTTGTGGAGAGGACTTGCAGATAAGTTGCAGTAGAGAGAGAAAGAGAGAGATGGGAAGAGGAAGAGTGGTTATGGAGAGAATAGAGAACAAGATCAACAGGCAAGTGACTTTCTCAAAGAGAAGGAATGGATTGCTGAAGAAAGCGTACGAGCTTTCTGTGTTGTGCGATGCTGAGATTGCTCTTATCATCTTTTCAAGCCGTGGAAAGCTTTTCCAGTACAGCAGCTCTGACATAAACAAAACCATAGAGCGGTATCGTCAAAGTTGTTACGTCTCACACGCTCACGAACTTGTTGAGCATGAATCTCAGAACTTGTACCAGGAGCTTTTGAGATTAAAAATCAATCACGAATCTCTTGAGAGGACACAAAGGCATCTGCTTGGAGAAGATCTTGAACCACTAAACTTGAAAGAATTGCATAATCTTGAGAAACAACTCGACAAAACCCTAATACAAGCACGACAGCGCAAGACCCAGAAGATGATGGAACGAGTTGACGAGTTACGCAGAAAGGGACACGAGCAAGAGGAGGTTAACAAGCAACTCAAGTACAAGCTTCAAGAAATATATGAACGCAGCCAAACTGTAGAAGAGGTTGAAGTCCAATCAGCCACAAATCAGAGCTCCTTACCAATATGGCAAGGGCAGAAGGAAGCTAGCTCAAAAGGGAAAGCGATTGACACGAGGACACAGGGAGGTCAGATCATTCATAATAATAATAGCATCAACCACAACAATGGATGGCTCATTTGA 798 0.4348 MLSFYFYLFLGGRWCCGEDLQISCSRERKREMGRGRVVMERIENKINRQVTFSKRRNGLLKKAYELSVLCDAEIALIIFSSRGKLFQYSSSDINKTIERYRQSCYVSHAHELVEHESQNLYQELLRLKINHESLERTQRHLLGEDLEPLNLKELHNLEKQLDKTLIQARQRKTQKMMERVDELRRKGHEQEEVNKQLKYKLQEIYERSQTVEEVEVQSATNQSSLPIWQGQKEASSKGKAIDTRTQGGQIIHNNNSINHNNGWLI 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g2641 265 Coils Coil 117 137 - -
Acco02g2641 265 PRINTS MADS domain signature 69 90 IPR002100 GO:0003677|GO:0046983
Acco02g2641 265 PRINTS MADS domain signature 34 54 IPR002100 GO:0003677|GO:0046983
Acco02g2641 265 PRINTS MADS domain signature 54 69 IPR002100 GO:0003677|GO:0046983
Acco02g2641 265 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 41 88 IPR002100 GO:0003677|GO:0046983
Acco02g2641 265 SUPERFAMILY SRF-like 33 119 IPR036879 GO:0003677|GO:0046983
Acco02g2641 265 ProSitePatterns MADS-box domain signature. 34 88 IPR002100 GO:0003677|GO:0046983
Acco02g2641 265 FunFam MADS-box transcription factor 1 44 115 - -
Acco02g2641 265 Gene3D - 44 119 IPR036879 GO:0003677|GO:0046983
Acco02g2641 265 ProSiteProfiles MADS-box domain profile. 32 92 IPR002100 GO:0003677|GO:0046983
Acco02g2641 265 Coils Coil 151 186 - -
Acco02g2641 265 SMART madsneu2 32 91 IPR002100 GO:0003677|GO:0046983
Acco02g2641 265 ProSiteProfiles K-box domain profile. 117 207 IPR002487 GO:0003700|GO:0005634|GO:0006355
Acco02g2641 265 CDD MADS_MEF2_like 33 108 IPR033896 GO:0000977|GO:0045944
Acco02g2641 265 Pfam K-box region 114 201 IPR002487 GO:0003700|GO:0005634|GO:0006355
Acco02g2641 265 PANTHER SERUM RESPONSE FACTOR HOMOLOG 32 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g2641 Acco-ChrAcco02 25741897 25750496 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g2641 32 226 MADS-box Gene Family AT2G45650 54.872 1.89e-64 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Acco02g2641 K-box 3e-22 No_clan