Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g2608 ATGCCTTCCCTTCCTGTATCTGATTTTGCCCATTCTGAGACTCCCAAAGATAAGAAGGAGAAGAAGAAGATGAAGAATGAGGCCCTACTTGACGATGGGGTTTGGTCGAAGAAGAAGAAGGAAAGCAAGAAGCGTAAAGCTCTAGATGTTGAGACGATGGGGAGTGAGGATGACGCAAAGAGTGAGACCAGTTCCGAGTTGGTTGAGCCTGATAGTGTGAAAGAAAAGAGGAAGAAGAAAAAGGCTAAGGTATCTGAAGATAAAGAGCAAGAGGTTGAGAAGGAGAACCCTAATGCTATTTCAAACTTTAGGATATCGGCGCCGTTGAGGGCCAAGTTGAAAGAGAAGGGGATTGAATCGCTATTTCCTATCCAGGCCATGACTTTTGATACCGTTCTAGATGGCGCTGATTTGGTTGGTCGGGCTCGCACTGGGCAGGGTAAAACTCTTGCCTTTGTGTTACCAATATTAGAGTCATTAACAAATGGTCCTGCAAAAGCAGCGAGGAAGTCTGGATATGGAAAGGCTCCATGTGTTCTTGTGCTCTTACCTACCAGAGAATTGGCCAAACAGGTGTTTTCTGATTTTGAAGTTTATGGTGGGGCATTGGGATTGACGTCTTGTTGTTTATATGGTGGAGCTCCATATCAAGCACAAGAATCTAAACTCAAGAAGGGCGTTGATGTTGTTGTTGGAACTCCAGGACGCATAAAAGATCACATAGAGAGGAACAATCTTGACCTGAGCCAACTAAAGTTCCGTGTCCTGGATGAAGCAGATGAGATGCTGAGGATGGGTTTTGTTGAAGATGTTGAACTCATTCTGGGTAAGGTAGAGGATGTTAGTAAAGTTCAGACACTTCTTTTCAGTGCTACTTTGCCAGGCTGGGTTAAGAGTATTTCTATGAAATTTCTGAAATCTAATAAAAAGACGGCTGACCTGGTGGGCAATGAGAAAATGAAAGCTAGCACTAATGTTAGGCATATTGTTCTCCCATGTTCTGGCCCTGCCAGATCCCAACTTATTCCAGACGTTATACGTTGCTATTGCAATGGAGGTCGGACAATTATATTTACTGAGACAAAGGAGTCTGCCTCTCAGCTAGCAGGGTTGTTGCCTGGTGCACGAGCTCTGCACGGTGATATACAGCAGTCACAACGTGAGGTCACCTTGGCTGGTTTCAGGGCTGGGAAGTTTAGTACATTAGTGGCCACAAATGTGGCGGCCCGTGGTTTGGACATTAATGACGTTCAGTTAATTATCCAGTGTGAACCACCACGTGATGTAGAAGACTATATCCATCGATCTGGGCGCACTGGAAGAGCAGGTAATACTGGAGTTGCTGTTATGCTTTATGATCCAAGGAGGTCAAATATATCAAAGATAGAGAGAGAATCTGGTGTGAAATTTGAACACATATCTGCTCCACAGCCTGCAGATATTGCCAAAGCTGTTGGTGGGAATGCTGCTAAAATGATAGCCCAAGTGTCTGATGATATTATCCCTGCATTCAAATCTGCTGCGGAGGATCTTTTAAACAATTCAGGCTTAACAGCAGTTGAATTGCTTGCAAAAGCTCTTGCTAAGACTGTTGGTTATACAGAGATAAAGAAAAGATCGCTACTCGCTTCCATGGAGAACCATGTTACATTACATCTTGAGATTGATAGACCCATCTACACTCCATCATTTGCATTTGGAATCTTGAGGAGATTCTTGCCTCAGGAGAAGGTTGACTCAGTGAAGGGTCTTACTCTCACCGCAGATGGAAATGGTGCTGTTTTTGATGTGTCAACTGAAGACTTAGATACCTTTCTTACTGGTTCGGAAAATGCTGCTAATGTTAGTTTAGAAGTAGTGGAAGCTTTGCCAAGTTTGCAAGAAAGAGAGCAATCAAGAGGTAGATTTGGCGGTGGCCGGAGCAGTGGTGGTGGTGGCGGCAACAGGTTTTCCAGTGGAAGGGGTGGTGGCAGATTTTCTAATGATCGAAATGGTAGGTTCAATAATTCTGGGGGCGGGAGAGGTCGTGGCAACTTTGGGGCAAAAAGGTGGTAA 2055 0.4448 MPSLPVSDFAHSETPKDKKEKKKMKNEALLDDGVWSKKKKESKKRKALDVETMGSEDDAKSETSSELVEPDSVKEKRKKKKAKVSEDKEQEVEKENPNAISNFRISAPLRAKLKEKGIESLFPIQAMTFDTVLDGADLVGRARTGQGKTLAFVLPILESLTNGPAKAARKSGYGKAPCVLVLLPTRELAKQVFSDFEVYGGALGLTSCCLYGGAPYQAQESKLKKGVDVVVGTPGRIKDHIERNNLDLSQLKFRVLDEADEMLRMGFVEDVELILGKVEDVSKVQTLLFSATLPGWVKSISMKFLKSNKKTADLVGNEKMKASTNVRHIVLPCSGPARSQLIPDVIRCYCNGGRTIIFTETKESASQLAGLLPGARALHGDIQQSQREVTLAGFRAGKFSTLVATNVAARGLDINDVQLIIQCEPPRDVEDYIHRSGRTGRAGNTGVAVMLYDPRRSNISKIERESGVKFEHISAPQPADIAKAVGGNAAKMIAQVSDDIIPAFKSAAEDLLNNSGLTAVELLAKALAKTVGYTEIKKRSLLASMENHVTLHLEIDRPIYTPSFAFGILRRFLPQEKVDSVKGLTLTADGNGAVFDVSTEDLDTFLTGSENAANVSLEVVEALPSLQEREQSRGRFGGGRSSGGGGGNRFSSGRGGGRFSNDRNGRFNNSGGGRGRGNFGAKRW 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g2608 684 MobiDBLite consensus disorder prediction 11 95 - -
Acco02g2608 684 CDD SF2_C_DEAD 326 452 - -
Acco02g2608 684 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 129 311 IPR014001 -
Acco02g2608 684 Pfam Helicase conserved C-terminal domain 351 443 IPR001650 -
Acco02g2608 684 CDD GUCT_RH7_like 539 624 - -
Acco02g2608 684 SMART helicmild6 366 443 IPR001650 -
Acco02g2608 684 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 341 482 IPR001650 -
Acco02g2608 684 MobiDBLite consensus disorder prediction 628 684 - -
Acco02g2608 684 Gene3D - 337 550 IPR027417 -
Acco02g2608 684 Pfam GUCT (NUC152) domain 532 627 IPR012562 GO:0003723|GO:0004386|GO:0005524
Acco02g2608 684 Pfam DEAD/DEAH box helicase 122 298 IPR011545 GO:0003676|GO:0005524
Acco02g2608 684 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 177 455 IPR027417 -
Acco02g2608 684 Gene3D - 42 311 IPR027417 -
Acco02g2608 684 MobiDBLite consensus disorder prediction 1 95 - -
Acco02g2608 684 SMART ultradead3 117 329 IPR014001 -
Acco02g2608 684 FunFam DEAD-box ATP-dependent RNA helicase 7 549 621 - -
Acco02g2608 684 Gene3D - 551 621 - -
Acco02g2608 684 MobiDBLite consensus disorder prediction 654 668 - -
Acco02g2608 684 SUPERFAMILY RNA-binding domain, RBD 536 619 IPR035979 GO:0003676
Acco02g2608 684 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 255 263 IPR000629 -
Acco02g2608 684 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 46 508 - -
Acco02g2608 684 CDD DEADc 109 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g2608 Acco-ChrAcco02 24783158 24787230 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g2608 135 482 Eukaryotic Initiation Factors Gene Family AT1G72730 31.445 2.97e-42 156