Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g2606 ATGGAGGCGAAGTCGAAGTCGATTTGGGAGAGGCAATTCCCTAGCAAGAAACTGATCCATATAAACCCTTCTCTTCTCTTTGTTCCTCATTTGCTGAGAATGGCAGAAGACGTTGAAGGAGTGACTTTTAAGGATCTGGGCTTAGCTGATCAGCTGGTGGACGCTTGTGAAAAGTTGGGTTGGACAAGACCGTTGAAGATTCAAGCTGAAGCAATTCCTCTTGCACTGGAAGGAAAAGATGTTATTGGGCTTGCACAAACTGGCTCTGGGAAGACTGGTGCTTTTGCTCTTCCGATACTGCATGCCCTTCTAGAAGCACCACGACCAAAACATTTTTTTTCCCTCGTGTTGTCTCCCACAAGAGAGCTTGCTATTCAAATCTCTGAACAGTTTGAAGCATTAGGTGCTGATATTGGTGTCAAGTGTGCTGTGTTAGTTGGAGGGATTGACATGGTGCCGCAGGCAGTCAAGATAGGAAAGCAGCCTCATATTATTGTTGGGACACCTGGTCGTGTTTTAGATCACCTAAAAAACACTAAAGGTTTTATTCTCAACGGATTAAAATATTTGGTCCTAGATGAGGCTGACAGGCTGCTGAATGAGGATTTTGAGCAATCTCTCCATGAGATTCTGGAAGCTATCCCTCGACAGAGAAGAACATTTCTGTTTTCTGCTACGATGACTAAGAAGGTTGAAAAACTCCAAAGGGTTCATTTAAGGAACCCTGTGAAGATCGAAGCAGCATCTAAATATTCTACTGTTGACACTTTGAAGCAGCAGTTTCGCTTTTTGCCTGCTAAGCACAAGGATTGCTACCTGGTCTATATTCTGAATGAAATGGCTGGAAGTACGTCCATGGTGTTTACCCGCACATGTGATTCAACCCAGCTCCTGGCTTTAACTCTTAGAAATTTGGGCTTCAAAGCCATCCCGATTAATGGCCATATGAGCCAGTCAAAGAGACTCGGAGCCTTGAATAAGTTCAAGTCCGGAGATTGCAATATCCTTCTTTGTACTGATGTTGCAAGTAGAGGTCTGGACATCCCCACGGTTGATATGGTTATCAACTATGATATCCCTACAAACTCAAAGGATTATATACATCGTGTGGGAAGAACTGCTCGGGCAGGGCGATCTGGCATTGCCATTTCCCTCGTGAATCAATACGAGCTGGAGTGGTACCTTCAGATAGAGAAGCTTATAAAAAAGAAGTTGCCAGAGTATCCTGCGCAGGAAGAGGAGGTTCTGCTTCTGGAAGAACGTGTCAGTGAGGCCAAAAGATTATCAGCAATGAAATTGAAGGAGAACGGAGGGAAGAGGAGAAGGAATGGTGAAGGAGATATTGAAGGGGAAGATATTGAGAATTACTTGGGAATCAAGAATGGAAAATCATCCAAGAAGAAGTTCAGAAGAAAATGA 1419 0.4383 MEAKSKSIWERQFPSKKLIHINPSLLFVPHLLRMAEDVEGVTFKDLGLADQLVDACEKLGWTRPLKIQAEAIPLALEGKDVIGLAQTGSGKTGAFALPILHALLEAPRPKHFFSLVLSPTRELAIQISEQFEALGADIGVKCAVLVGGIDMVPQAVKIGKQPHIIVGTPGRVLDHLKNTKGFILNGLKYLVLDEADRLLNEDFEQSLHEILEAIPRQRRTFLFSATMTKKVEKLQRVHLRNPVKIEAASKYSTVDTLKQQFRFLPAKHKDCYLVYILNEMAGSTSMVFTRTCDSTQLLALTLRNLGFKAIPINGHMSQSKRLGALNKFKSGDCNILLCTDVASRGLDIPTVDMVINYDIPTNSKDYIHRVGRTARAGRSGIAISLVNQYELEWYLQIEKLIKKKLPEYPAQEEEVLLLEERVSEAKRLSAMKLKENGGKRRRNGEGDIEGEDIENYLGIKNGKSSKKKFRRK 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g2606 472 Gene3D - 33 250 IPR027417 -
Acco02g2606 472 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 41 443 - -
Acco02g2606 472 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 272 416 IPR001650 -
Acco02g2606 472 CDD SF2_C_DEAD 257 386 - -
Acco02g2606 472 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 41 69 IPR014014 GO:0003724
Acco02g2606 472 Pfam Helicase conserved C-terminal domain 271 377 IPR001650 -
Acco02g2606 472 Gene3D - 251 423 IPR027417 -
Acco02g2606 472 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 191 199 IPR000629 -
Acco02g2606 472 CDD DEADc_DDX47 42 246 IPR044765 GO:0005524
Acco02g2606 472 SMART helicmild6 296 377 IPR001650 -
Acco02g2606 472 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 112 398 IPR027417 -
Acco02g2606 472 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 72 245 IPR014001 -
Acco02g2606 472 SMART ultradead3 60 260 IPR014001 -
Acco02g2606 472 Pfam DEAD/DEAH box helicase 66 234 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g2606 Acco-ChrAcco02 24686794 24695215 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g2606 42 409 Eukaryotic Initiation Factors Gene Family AT3G19760 31.183 3.22e-64 211