Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g2589 ATGGAAGAAAAAGATAGTTTTTTCTCCGGGCTTACCGTGAAGGCTAACGATGTTCCGGAAAGTCACCATGTCACTCCGAGAAGTGAAAACTATGGACTATTTGGCGGGCCCACAGGGGCATCGCCCGCCCGGGTGCCAGCACCAGCACCAGCTCCGACTACCGCTCCAACTTCATCTCCTGCTTCAGCTAGAGCTCCAGTGCCAGTTTCTGTTTCGGCGTCGGAACCGGTGAGTGTAGCGGCAGCAAGAGGGAGTACAGATGTAGTAAAGAAGAAAAGGGGAAGGCCTAGGAAGTACGGTCCTGATGGTAAATTAGCGTTGGCGTTGTCGCCGATGCCGATTTCGTCTTCAATTCCGTTGACTGGGGACTTCTCAATGTGGAAACGGGGCAGAGGACGGCCAGTTGAATCGGTCAAGAAGTCGTTTAAGTGCGATTTTGAAAGCCCTGGACCAGGTGATGGGATTGCATACTCAGTTGGTGCCAATTTCACACCCCATGTGCTTACTGTTAACGCTGGCGAGGATGTGAATATGAAGGTCATGTCCTTCTCTCAACAGGGATCTCGTGCTATTTGTATTCTTTCTGCAAATGGAACAATTTCAAATGTTACACTGCGTCAACCAACTTCTTCTGGGGGTACCTTAACATATGAAGGGCGATTTGAGATTCTTTCTTTGTCTGGTTCATATATGCCTTCCGAGAATGGTGTGACTAGAAGTAGATCTGGTGGGATGAGTGTCTCTTTGGCGGGCCCAGATGGTCGAGTTGTGGGAGGCGGCCTTGCTGGGCTCTTGGTGGCAGCAGGTCCTGTGCAGGTTGTTGTGGGAAGTTTTCTTCCAGGCCACCAGCAGATGCAGAAACCCAAGAAACAAAAGACGAATCATTTTTCGCCTGTCACATCTGGTCATTATAATCCCATTCCAGTGGACGAAATAAAAATCAGCTTCGGAGGAGTAAAGCCGATTATGACTCCTGCTGCATTTCAAGCCACCGACAACAACAACAACAACAACACCGCTTCTTTTAACAACATCCAGGGCTCTAGCAACTCATCTGCTGATGACGATGATGACGATGACGATGATGATACCCTTTATCCTGAAAAGGACTCTAACCCGAGCCAAACAAATGCTGGAGTCGCCTGCTAA 1149 0.4917 MEEKDSFFSGLTVKANDVPESHHVTPRSENYGLFGGPTGASPARVPAPAPAPTTAPTSSPASARAPVPVSVSASEPVSVAAARGSTDVVKKKRGRPRKYGPDGKLALALSPMPISSSIPLTGDFSMWKRGRGRPVESVKKSFKCDFESPGPGDGIAYSVGANFTPHVLTVNAGEDVNMKVMSFSQQGSRAICILSANGTISNVTLRQPTSSGGTLTYEGRFEILSLSGSYMPSENGVTRSRSGGMSVSLAGPDGRVVGGGLAGLLVAAGPVQVVVGSFLPGHQQMQKPKKQKTNHFSPVTSGHYNPIPVDEIKISFGGVKPIMTPAAFQATDNNNNNNTASFNNIQGSSNSSADDDDDDDDDDTLYPEKDSNPSQTNAGVAC 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g2589 382 ProSiteProfiles PPC domain profile profile. 160 299 IPR005175 -
Acco02g2589 382 Gene3D - 165 296 - -
Acco02g2589 382 SMART AT_hook_2 90 102 IPR017956 GO:0003677
Acco02g2589 382 SMART AT_hook_2 128 140 IPR017956 GO:0003677
Acco02g2589 382 SUPERFAMILY AF0104/ALDC/Ptd012-like 162 284 - -
Acco02g2589 382 MobiDBLite consensus disorder prediction 330 382 - -
Acco02g2589 382 MobiDBLite consensus disorder prediction 352 366 - -
Acco02g2589 382 Pfam Plants and Prokaryotes Conserved (PCC) domain 165 278 IPR005175 -
Acco02g2589 382 CDD DUF296 164 278 IPR005175 -
Acco02g2589 382 MobiDBLite consensus disorder prediction 284 301 - -
Acco02g2589 382 FunFam AT-hook motif nuclear-localized protein 1-like 165 296 - -
Acco02g2589 382 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 53 352 IPR039605 GO:0003680
Acco02g2589 382 MobiDBLite consensus disorder prediction 330 351 - -
Acco02g2589 382 MobiDBLite consensus disorder prediction 1 104 - -
Acco02g2589 382 MobiDBLite consensus disorder prediction 283 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g2589 Acco-ChrAcco02 24455541 24459278 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g2589 85 326 AT-hook Motif Nuclear Localized (AHL) Family AT4G25320 60.956 2.96e-90 276
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco01g0398 01 4730991 4733772 Acco02g2589 02 24455541 24459278 CCT
Acco01g0398 01 4730991 4733772 Acco02g2589 02 24455541 24459278 ECH
Acco02g2589 02 24455541 24459278 Acco02g2589 02 24455541 24459278 ECH