Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g2580 ATGGGTGTTTCAGTTCTTCTTCTCTTCTCTCTCCTGTTCTTTCTCTCTCACCCAACGTGGGTCTCTGGAAATGAAGAGCTCAAAGCTCTAATGGACATGAAAACTGCTCTTGATCCAGAAAGCCGTTATCTTTCTTCATGGACTTCAAATGGGAATCCGTGTGACGGTTCTTTTGAAGGAGTGGCTTGCAACGAGAATGGTCAAGTTGCTAACATTTCCTTGCAGGGGAAGGGTCTCTCTGGGAAGCTTTCGTCCGCCATTGATGGCCTCAAGCACTTAACAGGGCTTTACTTGCATTATAATGCTCTGTACGGTGAGATACCCAAAGAAATAGCCAACTTGCCTGAGCTCACTGATTTGTATTTGAATGTGAATCACTTCACTGGGGAAATCCCAACTGAGATCGGCAAAATGGAGAACTTGCAAGTTTTGCAGCTTTGCTGTAATCAATTGAAGGGAAGCATACCTACTCAGCTTGGTGGTTTGACGAAGCTTAGTGTTCTTGCTCTTCAGTCAAATCAATTAACTGGTGCTATCCCTGCTAGTTTAGGCAACTTGGAAATGTTAATGAGGCTTGACTTGAGTTCTAATCGCCTATTCGGTTCGATCCCCTCGAAATTAGCCGATGCCCCTTCCCTGCAAGTTCTTGATGTTCGCAACAATACTCTCTCTGGGAATGTACCACCTGCTCTGAAGAGGCTTGAAGATGGATTTTTGTATGAATACAATCTGGGATTATGTGGAGCTGGGTTTTCACCCCTGAAGACTTGCAGTGCAACTGATCATGTTGATCCTAGTGGGCTTGATCCGTATGGAGCCGGCATTCACGGTCACACGACGAGGGATATTCCGGAAACTGCGAATTTTCAGTTGCCCTGCAACGGAACTCAGTGCCCAAAGTCGTCGAGATCCAAACAAACAACAACATCTGTAACTGTTGGCATAATTGTGATTGCCATAGCAGTTTCAGCAGTTGGCATTCTAACCTTTGTACATCATCGCCGGAGAAAACAAAAGCTCGGAAACTCCTATGACGTCTCTGATAGCCGTCTAAGTACTGATCAAGCTAAGGCAGTCATATACAGGAAAAATGGCTCTCCTTTAATCAGCCTTGAGTACTCCAATGGATGGGACCCTTTGGCTGATAGCAGGAATTTCAATGGGGATAGCCAAGACATGTTCCAAAGCTTCAGGTTCAACTTGGAAGAGGTCGAAACTGCGACGCAGTACTTCTCGGACTCGAATCTGTTAGGTAAGAGTAACTTCAGTGCAACATATAAAGGAGTGTTGAGAGATGGATCTGTGGTTGCTGTGAAGAGCATCAGCAAAAGTAGTTGCAAGTCGGATGAAGCTGAGTTTTTGAAGGGATTGAACATTTTGACATCACTGAGGAATGAGAATCTAGTGAGGCTCAGAGGCTTTTGTTGTTCTAGGGGACGAGGCGAGTGCTTTCTTGTCTATGATTTTGTTCCTAATGGGAATCTTTCGAGCTACCTCGATGTAAAAGAAGGCGATGCACAAGTCCTTGAATGGTCAACCAGAGTTTCCATTGTCAAAGGGATTGCTAAAGGTGTTGCATATTTACATGCACACAAAGCGAATAAACCAGCGCTTGTTCACCAAAACATCTCAGCTGAGAAAGTGCTCATTGATCAGCGATTCAATCCATTGCTTGTGGATTCTGGCCTCTGCAAGATCATTACCAACGACATTGTCTTTTCGGGGCTCAAGGCGAGTGCGGCGAAGGGCTATCTAGCTCCAGAGTACACGACCACCGGTCGGTTCACTGAGAAAAGTGATGTGTATGCGTTTGGAGTGCTTCTTTTGCAGATCCTCTCTGGGAAGCAGAAGATCACAAGCACGATGCGCCTCTTGGCAGAATCGTCGAGGTTCCTAGAAGTTATGGACCCGAATTTGCACGCAAAGTTCTTTGAGTTCGAGGCAGCTAAGTTGTTGAAGATGGCTCTGGTTTGTTCCCATGAGTCTCCTTTTGAGAGGCCATCCATGGAAGCCATTGTTCAGGAACTGAACAATTGTAGTAGCTGTCTGTGA 2052 0.4557 MGVSVLLLFSLLFFLSHPTWVSGNEELKALMDMKTALDPESRYLSSWTSNGNPCDGSFEGVACNENGQVANISLQGKGLSGKLSSAIDGLKHLTGLYLHYNALYGEIPKEIANLPELTDLYLNVNHFTGEIPTEIGKMENLQVLQLCCNQLKGSIPTQLGGLTKLSVLALQSNQLTGAIPASLGNLEMLMRLDLSSNRLFGSIPSKLADAPSLQVLDVRNNTLSGNVPPALKRLEDGFLYEYNLGLCGAGFSPLKTCSATDHVDPSGLDPYGAGIHGHTTRDIPETANFQLPCNGTQCPKSSRSKQTTTSVTVGIIVIAIAVSAVGILTFVHHRRRKQKLGNSYDVSDSRLSTDQAKAVIYRKNGSPLISLEYSNGWDPLADSRNFNGDSQDMFQSFRFNLEEVETATQYFSDSNLLGKSNFSATYKGVLRDGSVVAVKSISKSSCKSDEAEFLKGLNILTSLRNENLVRLRGFCCSRGRGECFLVYDFVPNGNLSSYLDVKEGDAQVLEWSTRVSIVKGIAKGVAYLHAHKANKPALVHQNISAEKVLIDQRFNPLLVDSGLCKIITNDIVFSGLKASAAKGYLAPEYTTTGRFTEKSDVYAFGVLLLQILSGKQKITSTMRLLAESSRFLEVMDPNLHAKFFEFEAAKLLKMALVCSHESPFERPSMEAIVQELNNCSSCL 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g2580 683 FunFam Protein NSP-INTERACTING KINASE 2 382 489 - -
Acco02g2580 683 Pfam Leucine rich repeat 140 199 IPR001611 GO:0005515
Acco02g2580 683 Gene3D Ribonuclease Inhibitor 23 259 IPR032675 -
Acco02g2580 683 Pfam Protein tyrosine and serine/threonine kinase 415 676 IPR001245 GO:0004672|GO:0006468
Acco02g2580 683 SUPERFAMILY Protein kinase-like (PK-like) 387 677 IPR011009 -
Acco02g2580 683 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 149 678 IPR046959 -
Acco02g2580 683 FunFam Protein NSP-INTERACTING KINASE 2 136 258 - -
Acco02g2580 683 ProSiteProfiles Protein kinase domain profile. 411 683 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco02g2580 683 SUPERFAMILY L domain-like 26 233 - -
Acco02g2580 683 FunFam Leucine-rich repeat receptor-like kinase 25 134 - -
Acco02g2580 683 FunFam Protein NSP-INTERACTING KINASE 2 490 680 - -
Acco02g2580 683 Gene3D Phosphorylase Kinase; domain 1 381 489 - -
Acco02g2580 683 Pfam Leucine rich repeat N-terminal domain 24 64 IPR013210 -
Acco02g2580 683 Gene3D Transferase(Phosphotransferase) domain 1 490 682 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g2580 Acco-ChrAcco02 24308628 24311819 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g2580 7 524 Miscellaneous Gene Families AT4G22730 56.015 0.0 581
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IV Acco02g2580 PK_Tyr_Ser-Thr 4.2e-37 CL0016