Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g2563 ATGGAGTCTAGAATTGTTGATATTGATGAGAAGAAGCCAAGCGTGGAGGAGCATGGTGCAGATCAGAAGAAGAAGAAGGCGACAATAATAAGGTACAGAGAATGCATGAAGAACCATGCAGCTTCAATAGGAGGGAACGCAACAGACGGGTGTGGTGAGTTCATGGCCTCAGAAGAAGACTCTCTCAAGTGCTCAGCCTGCAAATGCCACAGAAACTTCCACAGAAAATACTTCGAAGGATCTCAAGATTCTGATGATATCCCTTCTTCTTCTCCATATTACCATGTTTCTTCGCAGATGATGATGCTTCTTCCAAATAATGATGTTGCTTGTGCTGATGATCAACATGATCAGGTTGTGAAACCCTTATTGACCCATGATTTGTGTCTCACAAATTATAATAAAAGTGGTTGTTCAGATCATGATGAGAGTGATGGAAAGAGGGTGATGATGGTGAAGAATAAGAGGTTCAGGACAAAGTTCAGTGAAGAGCAGAAGGAGAAGATGCTGAGATTTGCAGACAAGGTTGGGTGGAGGATGCAGAAAGTGGATGAATCCATGGTTCAGCAGTTTTGTGAAGAAGCTGGCATCAAGAGAAGAGCCCTCAAAGTGTGGATGCACAATAACAAGAACTCTGTTGCCAAGAGAAGAAACCACCTCATCTCCCCTAGCTGA 675 0.4326 MESRIVDIDEKKPSVEEHGADQKKKKATIIRYRECMKNHAASIGGNATDGCGEFMASEEDSLKCSACKCHRNFHRKYFEGSQDSDDIPSSSPYYHVSSQMMMLLPNNDVACADDQHDQVVKPLLTHDLCLTNYNKSGCSDHDESDGKRVMMVKNKRFRTKFSEEQKEKMLRFADKVGWRMQKVDESMVQQFCEEAGIKRRALKVWMHNNKNSVAKRRNHLISPS 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g2563 224 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 31 76 IPR006456 -
Acco02g2563 224 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 19 212 - -
Acco02g2563 224 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 32 77 IPR006456 -
Acco02g2563 224 FunFam Zinc-finger homeodomain protein 2 141 215 - -
Acco02g2563 224 Gene3D - 138 215 - -
Acco02g2563 224 SUPERFAMILY Homeodomain-like 143 215 IPR009057 -
Acco02g2563 224 MobiDBLite consensus disorder prediction 1 23 - -
Acco02g2563 224 Pfam ZF-HD protein dimerisation region 30 77 IPR006456 -
Acco02g2563 224 NCBIfam homeobox domain, ZF-HD class 155 211 IPR006455 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g2563 Acco-ChrAcco02 24068245 24068919 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g2563 26 218 ZF-HD Transcription Factor Family AT1G14440 46.411 5.72e-56 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Acco02g2563 ZF-HD_dimer 5.8e-24 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco02g2563 02 24068245 24068919 Acco02g2563 02 24068245 24068919 ECH