LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Acco02g2492	ATGATAGCTATGGATTCCGGCGCCTGTTTCTTTTCTGGAAAGTTTGAGAACGATGATGCTAATGTTGTGGAGAAGGATCCTACGGGACGTTATGTTTGGTATGATGATATGTTGGGCAGAGGAGCATTCAAGACTGTCAAAGTGGATATTGTGCACGTTTTGCGGTCTCCAGTTAAATTGGAAATGTTAGATTCTGAGGTCCATCTCCTAAAGTCACTGCAACATGAAAAAATCCTCAAGTGCTATGATTCTTGGGTGGACGATAAAACCAAGACTATCAACATGATAACTGAGTTATTTGTCTCTGGGAGTTTGGGGCGGATTAGATATCGAAGAATGCATAAGAATGTTCAATTGAAGGCCATCAAAAACTGGGCAAGGCAAATTCTTCTGGGTTTATGCCATTTGCACAGCCACAATCCTCCTATCATCCATAGAGATTTGAAGTGTGATAATATTTTTATTAATGGTAATACTGGAGAAATTAAGATAGGAGATCTTGGATTGGCAACTGTCCTACAGCAACCTACTGCACACTCTGTCATTGGGACACCAGAATTCATGGCTCCTGAGCTTTATGATGAAGAGTATAATGAACTTGTTGACATTTATTCTTTTGGTATGTGTATGTTAGAAATGATAACCTGTGAGTACCCATACAGCGAATGCAAAAATCATGCACAGATATATAAGAAAGTTACCAAGGGAATAAAGCCTGCTGCTCTTAGTAAAGTGAGTGATCCCCAAGTGAGGCAATTCATAGAGAAATGTTTGGTTCCTGCATCTATGAGATTGCCTGCATCTGAGCTATTGAAGGATCCATTTCTTGCTACTGATGATACGAAGGAGGTCAACCATGAAGTGCAGTTGCCCATTCCGCCAACAACTGAGCAACGTCCTTTGGAGATGGGCCAAACTGTCAAGGATGTTTTGCCTTTGAAAGTTTCTCAAGAAACCCCTCAAGTATTAACTCTAGATCTCCCTGGGACGAACGAGGGTACTAAATTCAGGCTACAAGGGGAGAAAAATGCTTCAGACAGAACAATTTCACTAACTCTGCGCATTGCCAAAGCAAATGGTCCTGTGCAGAAAATCGAGTTTCCATTCTATCTTGATTCTGATACGGCCATTACAATTGCTGAGGAGATGGTAGGAAGTCTGAATCTCCCTGCTGAGGACGAGAGTGTTATTGCTGAACTGATACACACCATGATTGTGAGGCTTGTTCCTCACTGGAGATCATCTGGAGCAGATTGTTTGGATGGCAATTCTCATGTAGTTGTAAATGGGGGATCACCTGGTGATGAGGATCCTGTTTACTCACAGGTTCTTGAGGAAGATCGAGAGAAGCTTGAATCAATCACGGATGCTAAATCTAATAATACGCTCTTTGATGGAGTCTCTGAGGGCTCCATTGCCAAAAGTTCCAATTCAGACTTCTGGTTATCTGATCAAGACGAAGACAAAGTTCAATGTGACCAGCTGCCACCAGAGCTCGATACAATAGAAAACACAAGGAGGAGATGTTGTTTTCGCCCATTATTCTCTCTGTCCCTTACATTTTCCCCCATTAGTGGAGGTCGATTGATTTTGGTTCCTTTGAATCGGGCCTTGTATTATTTCATTTTTCTCGGTCTCCGCCTCTGCATGTTCGTGCTCGTGGGTCTCCGCCTCTGTGCCTCCTTGGTTGTTGATCTACGGCTGTTTCAGAAAGAAAGAGATTATGTGAATTATAAGGAGCCATCCTCGCTCTTTGAAAATTTTGTGATTGTGGGGCTGCTTCCAGATGCCAATTTAGAGGCTGTGGAGGAAGCATTTGTAGAAAGAAAGAAATGGCAAAAGGAGAAAGCAAAATCTGAATTTCTAGACTCCAAAACGTTGCAGCAATAG	1890	0.4228	MIAMDSGACFFSGKFENDDANVVEKDPTGRYVWYDDMLGRGAFKTVKVDIVHVLRSPVKLEMLDSEVHLLKSLQHEKILKCYDSWVDDKTKTINMITELFVSGSLGRIRYRRMHKNVQLKAIKNWARQILLGLCHLHSHNPPIIHRDLKCDNIFINGNTGEIKIGDLGLATVLQQPTAHSVIGTPEFMAPELYDEEYNELVDIYSFGMCMLEMITCEYPYSECKNHAQIYKKVTKGIKPAALSKVSDPQVRQFIEKCLVPASMRLPASELLKDPFLATDDTKEVNHEVQLPIPPTTEQRPLEMGQTVKDVLPLKVSQETPQVLTLDLPGTNEGTKFRLQGEKNASDRTISLTLRIAKANGPVQKIEFPFYLDSDTAITIAEEMVGSLNLPAEDESVIAELIHTMIVRLVPHWRSSGADCLDGNSHVVVNGGSPGDEDPVYSQVLEEDREKLESITDAKSNNTLFDGVSEGSIAKSSNSDFWLSDQDEDKVQCDQLPPELDTIENTRRRCCFRPLFSLSLTFSPISGGRLILVPLNRALYYFIFLGLRLCMFVLVGLRLCASLVVDLRLFQKERDYVNYKEPSSLFENFVIVGLLPDANLEAVEEAFVERKKWQKEKAKSEFLDSKTLQQ	629

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Acco02g2492	629	Pfam	Oxidative-stress-responsive kinase 1 C-terminal domain	350	405	IPR024678	GO:0004674\|GO:0005524
	Acco02g2492	629	PANTHER	SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED	17	455	-	-
	Acco02g2492	629	SMART	serkin_6	34	276	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Acco02g2492	629	Pfam	Protein kinase domain	59	276	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Acco02g2492	629	SUPERFAMILY	Protein kinase-like (PK-like)	27	285	IPR011009	-
	Acco02g2492	629	FunFam	probable serine/threonine-protein kinase WNK9	100	281	-	-
	Acco02g2492	629	ProSiteProfiles	Protein kinase domain profile.	32	276	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Acco02g2492	629	Gene3D	Transferase(Phosphotransferase) domain 1	102	284	-	-
	Acco02g2492	629	Gene3D	-	347	419	-	-
	Acco02g2492	629	Gene3D	Phosphorylase Kinase; domain 1	16	98	-	-
	Acco02g2492	629	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	143	155	IPR008271	GO:0004672\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Acco02g2492	Acco-ChrAcco02	22698382	22704690	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Acco02g2492	4	415	MAP Kinase Kinase Kinase	AT5G41990	57.044	1.55e-152	450

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	WNK_NRBP	Acco02g2492		Pkinase	1.5e-42	CL0016