Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g2458 ATGGGCTGCAGTAGCGAAATTTTCCTGCCCACTCTTCTGGACAGGAAAAAGCTCAGAAGCCCTCCAAAAATGGCGCTCTCATCCACAGTCAAAGAACCAGAAAACCGAGAACACTTGAACTGCACTTTTGCCTCCAGATATGTCCGCAACCCTGTTCCCAAGTTTAAGATGCCGGAGAGGTCCATACCCAAGGATGCGGCGTACCAGATTATAAACGACGAGTTGATGCTGGACGGAGCTCCCAGGCTGAACTTGGCTTCCTTCGTCACCACTTGGATGGAGCCCGAGGTCGACAAGCTAATCATGGCCTCCCTTAATAAGAACTACGTTGACATGGACGAGTACCCTGTTACCACTGAGCTTCAGAACCGATGTGTGAATATGATTGCCCATTTGTTCAATGCTCCTATTGGAGAAGATGAGACTGCGGTGGGTGTGGGAACTGTGGGTTCATCAGAAGCAATCATGCTGGCAGGTCTTGCTTTCAAAAGAAAATGGCAGATAAAGAGAAAATCAGAAGGAAAACCATATGATAAACCCAACATAGTTACCGGAGCTAATGTTCAGGTTTGTTGGGAGAAATTCGCGAGGTACTTTGAGGTGGAGCTGAAGGAGGTGAAGCTTAGTGAGGGATGTTATGTGATGGACCCAAAGAAAGCTGTGGAATTGGTGGATGAGAACACAATATGTGTAGCAGCAATATTGGGGTCGACTCTGACCGGAGAGTTTGAGGATGTGAAGCTGTTGAATGAGCTTCTTACAGAGAAGAACAAGGAGACAGGATGGGACACTCCAATTCATGTGGATGCGGCAAGTGGAGGTTTTATTGCTCCGTTCCTGTACCCTGATCTCGTGTGGGATTTTCGCTTGCCATTGGTGAAGAGTATTAATGTTAGTGGTCATAAGTATGGTCTTGTGTATCCTGGTGTTGGTTGGGTTGTGTGGAGGAGTAAGGATGACTTGCCTGATGATCTTGTCTTCCATATCAACTATCTTGGCACTGATCAGCCCACTTTCACCCTCAATTTCTCCAAAGGCTCTAGTCAAATAATTGCTCAGTATTTTCAGTTCATTCGGCTTGGCTTCGAGGGTTACAAAAACATCATGGAGAACTGCGTGGAGAACGCGAGATTACTGAAGGAAGGAATCGAGAGAACAGGTCGGTTCAACATTCTGTCCAAGGACATGGGAGTGCCGGTGGTAGCCATGTCTTTGAAAGACAGCAGCCAGCACACGGTGTTCGAGATATCGGACCATCTCAGGAGGTTCGGGTGGATTGTCCCAGCATATTCAATGCCACCGGATGTGCAGCATGTGGCGGTGCTGCGGGTGGTCATCCGGGAGGACTTCAACCGGAGCCTGGCAGAGAGGCTCATGTCAGACATTGAAAAGGTTGTCAAGCTGCTGGACGCACTTCCTAGTCCTCTGCCCCTTAAAGCTGCTCATGTCGGTACCACAGCTAACGAGAGTGATCATCATCACAAGGTTAAGAAGAGTGAGATGGAGATTCAAGCAGAGGTTGTGGAATTTTGGAAGAGGTTTGTGGAAGGCAGGAGAACTGGAGCTTGCTAG 1572 0.4828 MGCSSEIFLPTLLDRKKLRSPPKMALSSTVKEPENREHLNCTFASRYVRNPVPKFKMPERSIPKDAAYQIINDELMLDGAPRLNLASFVTTWMEPEVDKLIMASLNKNYVDMDEYPVTTELQNRCVNMIAHLFNAPIGEDETAVGVGTVGSSEAIMLAGLAFKRKWQIKRKSEGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGCYVMDPKKAVELVDENTICVAAILGSTLTGEFEDVKLLNELLTEKNKETGWDTPIHVDAASGGFIAPFLYPDLVWDFRLPLVKSINVSGHKYGLVYPGVGWVVWRSKDDLPDDLVFHINYLGTDQPTFTLNFSKGSSQIIAQYFQFIRLGFEGYKNIMENCVENARLLKEGIERTGRFNILSKDMGVPVVAMSLKDSSQHTVFEISDHLRRFGWIVPAYSMPPDVQHVAVLRVVIREDFNRSLAERLMSDIEKVVKLLDALPSPLPLKAAHVGTTANESDHHHKVKKSEMEIQAEVVEFWKRFVEGRRTGAC 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g2458 523 NCBIfam glutamate decarboxylase 42 469 IPR010107 GO:0004351|GO:0006536|GO:0030170
Acco02g2458 523 Gene3D - 24 90 - -
Acco02g2458 523 Gene3D - 91 385 IPR015421 GO:0003824
Acco02g2458 523 Gene3D - 386 473 - -
Acco02g2458 523 FunFam Glutamate decarboxylase 29 90 - -
Acco02g2458 523 FunFam Glutamate decarboxylase 91 385 - -
Acco02g2458 523 FunFam Glutamate decarboxylase 386 473 - -
Acco02g2458 523 SUPERFAMILY PLP-dependent transferases 38 468 IPR015424 -
Acco02g2458 523 PANTHER GLUTAMATE DECARBOXYLASE 24 523 IPR010107 GO:0004351|GO:0006536|GO:0030170
Acco02g2458 523 CDD DOPA_deC_like 84 464 - -
Acco02g2458 523 Pfam Pyridoxal-dependent decarboxylase conserved domain 58 406 IPR002129 GO:0016830|GO:0019752|GO:0030170
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g2458 Acco-ChrAcco02 22236613 22242886 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g2458 24 523 Calmodulin-binding Proteins AT5G17330 76.238 0.0 799