Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g2453 ATGTGTAGTAGAGGCCATTGGAGGCCAGCCGAGGATGAGAAACTTCGAGAGTTGGTGGAGCGTTATGGTCCTCATAATTGGAACGCCATAGCTGAAAAGCTTCGAGGAAGATCGGGAAAGAGCTGCAGGTTGAGGTGGTTTAATCAACTGGACCCAAGAATAAATAGGAGTCCATTCACAGAGGAAGAAGAAGAGAGGCTTGTGGCTTCTCATAGGATCCATGGAAACAGATGGGCTGTGATTGCCAGGCATTTCCCAGGACGAACTGATAATGCTGTGAAGAACCACTGGCACGTTATGATGGCCAGGATTCGCAGAGAAAAGTCCAAGCTTTATTCCAAACAACGCCCTCTTCATCATCACAATCAGCTCACTAATTCTACACCATCTGATCCTGCTCCTGATCATCAGGATCGTCACACAAAGACGAAGATGATTAGTCCTATTATTGTTCCTGCTTTCTTTGAGAAATACTATGATAAGCACGCCTTCCCTGCTTATTGTCTTCCTTATTATAATAACCCTTTCCTTCAATTTCCCAACAAGTTTCATCAACAACTTCAACGCCCTTCTTCCTCTTCTTCAGTTCTTCACGATAAAAGTGAGTCAGTTGAGTTCTATGACTTTCTTCAAGTGAACACTGATTCAAATAATAGAAGCGAGGTGACAGACAATGCAAGAAGGGAAGACGAGGAAGTGAATCAAGACAGTGAACATAATAATGTGGGAGGACGAGGACGACAGAACAAAGACGGTGTTGGTGGTGCTCCGTTTATAGATTTTTTGTCTGTTAATGTAAACTAG 804 0.4341 MCSRGHWRPAEDEKLRELVERYGPHNWNAIAEKLRGRSGKSCRLRWFNQLDPRINRSPFTEEEEERLVASHRIHGNRWAVIARHFPGRTDNAVKNHWHVMMARIRREKSKLYSKQRPLHHHNQLTNSTPSDPAPDHQDRHTKTKMISPIIVPAFFEKYYDKHAFPAYCLPYYNNPFLQFPNKFHQQLQRPSSSSSVLHDKSESVEFYDFLQVNTDSNNRSEVTDNARREDEEVNQDSEHNNVGGRGRQNKDGVGGAPFIDFLSVNVN 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g2453 267 MobiDBLite consensus disorder prediction 118 132 - -
Acco02g2453 267 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 51 105 IPR017930 -
Acco02g2453 267 Gene3D - 57 123 - -
Acco02g2453 267 ProSiteProfiles Myb-like domain profile. 51 101 IPR001005 -
Acco02g2453 267 SMART sant 55 103 IPR001005 -
Acco02g2453 267 SMART sant 3 52 IPR001005 -
Acco02g2453 267 PANTHER MYB PROTEIN-RELATED 4 142 - -
Acco02g2453 267 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 50 IPR017930 -
Acco02g2453 267 SUPERFAMILY Homeodomain-like 4 97 IPR009057 -
Acco02g2453 267 ProSiteProfiles Myb-like domain profile. 1 50 IPR001005 -
Acco02g2453 267 Gene3D - 4 55 - -
Acco02g2453 267 Pfam Myb-like DNA-binding domain 7 67 - -
Acco02g2453 267 MobiDBLite consensus disorder prediction 221 238 - -
Acco02g2453 267 MobiDBLite consensus disorder prediction 110 142 - -
Acco02g2453 267 CDD SANT 7 48 IPR001005 -
Acco02g2453 267 CDD SANT 58 101 IPR001005 -
Acco02g2453 267 FunFam MYB transcription factor 4 55 - -
Acco02g2453 267 MobiDBLite consensus disorder prediction 215 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g2453 Acco-ChrAcco02 22193754 22195085 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g2453 1 264 MYB Transcription Factor Family AT1G17950 53.788 4.83e-80 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Acco02g2453 Myb_DNA-bind_6 1.1e-16 CL0123