Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g2438 ATGTCGTCATCATCACTCCCAACTTCGCATCAGCAGCTCTCCACCGCCGCCGCTGAGAATAATACATCTGCAACTACAAACAAAAGAAAGAGAAGACCGGCCGGAACACCAGATCCGGATGCGGAGGTGGTGTCTTTGTCGCCGAAGACGCTATTGGAATCGGACCGGTACGTGTGCGAGATCTGCAACCAGGGATTTCAGAGGGACCAGAACCTGCAGATGCACAGGAGGAGGCACAAGGTGCCGTGGAAGCTGCTCAAGAGGGAGACGCCGGTGGTGAGGAAGAGGGTGTTTGTGTGCCCGGAGCCCACCTGCTTGCACCACGACCCGTGCCACGCCCTCGGCGACCTCGTCGGAATCAAGAAACACTTCCGCCGCAAACACAGCAACCACAAGCAATGGGTCTGCCACCGCTGCTCCAAGGCCTACGCCGTCCAGTCCGACTACAAGGCCCATCTCAAGACCTGTGGCACTCGCGGCCATTCCTGTGATTGTGGCCGAGTATTCTCCAGGGTGGAGAGTTTCATCGAACACCAAGATGCGTGCAATATGGGTCGGCTCCGGCCACAGCAGCCACAGCAACCGGCGTGTCTATCTCGAACTGCATCGAGCCCGAGCCCATCGAGCGATACGAATTTCAGCGCCGGTCCGGCCTGGCCTACCCCGCCCGGTCTGGTGATACCAAAGCCAACAACAACGGCCGAACCCACATTCTTCCAGAACAATAACAACCCTATTATTGCTGATCAAACCTCGTCCAAAACCAACGCCAACACCAACAACCAAAGCAGCAACAAGAAGCTCTACCCCAACTTGGACCTTCAGCTCTCAACCGCCACGCCAAACGTCGACGACACCCACTCCACGCAGCTACAGCTCTCGATCGGGTCGTCGACGGACATGAGCGACAAAAACGAATCAAACAGGAACAATAATAATTCATCCCCAAAGGAGAGTAGTAACAGCAGCGATAAGCCGCCAGCTGGCGCGGTGGCAGCGGCGTTGATGGTGGAGAAAACGTACGCTGAAGAGGCGAGGAAGGAGGCCAAGAGGCAGATGGAGGCGGCGGAGCAAGAGTTTGCGAACGCGAGGAGATTAAGGCAGCAAGCTCAAGCGGAACTGGATAAAGCATACGCATTGAAAGAGCAAGCCATTAAGCAGATAAATTCCACTATGCTTCAGATCACTTGTCAAGCTTGTAAGCAATTGTTTCAACAGCAAGCTCATAAATTAATAACGGAAGGTGGAGGCCAGGTATTAGAAGACAACAATAACGGCAAAGATCAAAACCACTAA 1296 0.5432 MSSSSLPTSHQQLSTAAAENNTSATTNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETPVVRKRVFVCPEPTCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCHRCSKAYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACNMGRLRPQQPQQPACLSRTASSPSPSSDTNFSAGPAWPTPPGLVIPKPTTTAEPTFFQNNNNPIIADQTSSKTNANTNNQSSNKKLYPNLDLQLSTATPNVDDTHSTQLQLSIGSSTDMSDKNESNRNNNNSSPKESSNSSDKPPAGAVAAALMVEKTYAEEARKEAKRQMEAAEQEFANARRLRQQAQAELDKAYALKEQAIKQINSTMLQITCQACKQLFQQQAHKLITEGGGQVLEDNNNGKDQNH 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g2438 431 Gene3D Classic Zinc Finger 45 130 - -
Acco02g2438 431 MobiDBLite consensus disorder prediction 295 329 - -
Acco02g2438 431 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 9 388 IPR031140 -
Acco02g2438 431 Coils Coil 339 387 - -
Acco02g2438 431 FunFam protein indeterminate-domain 12-like 36 104 - -
Acco02g2438 431 MobiDBLite consensus disorder prediction 1 46 - -
Acco02g2438 431 MobiDBLite consensus disorder prediction 186 270 - -
Acco02g2438 431 SUPERFAMILY beta-beta-alpha zinc fingers 54 80 IPR036236 -
Acco02g2438 431 ProSiteProfiles Zinc finger C2H2 type domain profile. 57 79 IPR013087 -
Acco02g2438 431 MobiDBLite consensus disorder prediction 186 216 - -
Acco02g2438 431 SMART c2h2final6 134 161 IPR013087 -
Acco02g2438 431 SMART c2h2final6 98 128 IPR013087 -
Acco02g2438 431 SMART c2h2final6 57 79 IPR013087 -
Acco02g2438 431 MobiDBLite consensus disorder prediction 295 326 - -
Acco02g2438 431 MobiDBLite consensus disorder prediction 233 270 - -
Acco02g2438 431 MobiDBLite consensus disorder prediction 1 30 - -
Acco02g2438 431 ProSitePatterns Zinc finger C2H2 type domain signature. 59 79 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g2438 Acco-ChrAcco02 21962060 21964210 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g2438 22 408 C2H2 Transcription Factor Family AT2G01940 56.359 2.24e-144 417
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Acco02g2438 None None None