Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g2437 ATGGACGGAGTTGGAGGAGGAGAAGGAGGAGGAGATCACGGAAACTCGTCCTCGAATTCTATCTACAGGGAGTGTCTGCGAAACCATGCGGCGAGCCTTGGGAGCTATGCCACCGATGGCTGCGGTGAGTTCACGCTGGACGACACATCTCCAGGAGGGTGCCTGCAATGCGCCGCCTGCGGCTGCCACCGCAACTTCCACCGCAAGGTGACATGCCCGCCCCCTCCGAGGCTGACGACGGGGGAGATGATGGAGTACAGCGGTGGAGAGGGGACGCCGCCGCCAAGCGGGGAGATAATGAGGACGACGACGTCGACGGGGACGAATAAAAAGAGGTTCAGGACGAAGTTCACGGCGGAGCAGAAAGAGAAGATGATGGGATTCGCGGAGAAGCTTGGGTGGAAGTTGCAGAGGAAAGATCTAGACGATGAGATAGAGAGGTTCTGCAGAGGAGTGGGAGTGAGCAGACAAGTGTTCAAGGTTTGGATGCATAATCATAAGAACTCTTCTTCTTCCTCTTCTGCTTCTACTGGCAATGTCTCCTCTCTTACCCAGTAA 558 0.5609 MDGVGGGEGGGDHGNSSSNSIYRECLRNHAASLGSYATDGCGEFTLDDTSPGGCLQCAACGCHRNFHRKVTCPPPPRLTTGEMMEYSGGEGTPPPSGEIMRTTTSTGTNKKRFRTKFTAEQKEKMMGFAEKLGWKLQRKDLDDEIERFCRGVGVSRQVFKVWMHNHKNSSSSSSASTGNVSSLTQ 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g2437 185 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 22 70 IPR006456 -
Acco02g2437 185 FunFam Zinc-finger homeodomain protein 2 98 172 - -
Acco02g2437 185 MobiDBLite consensus disorder prediction 166 185 - -
Acco02g2437 185 Gene3D - 96 174 - -
Acco02g2437 185 Pfam ZF-HD protein dimerisation region 21 71 IPR006456 -
Acco02g2437 185 MobiDBLite consensus disorder prediction 86 108 - -
Acco02g2437 185 NCBIfam homeobox domain, ZF-HD class 110 168 IPR006455 -
Acco02g2437 185 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 19 169 - -
Acco02g2437 185 SUPERFAMILY Homeodomain-like 98 168 IPR009057 -
Acco02g2437 185 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 22 69 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g2437 Acco-ChrAcco02 21937785 21938342 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g2437 22 169 ZF-HD Transcription Factor Family AT4G24660 47.701 4.45e-43 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Acco02g2437 ZF-HD_dimer 1.6e-22 No_clan