Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g2410 ATGGTTCTTGGATGGAGGAGAAGAAAGAACTGCCGTCACAAGGACAATCTTCGTCTCGAGCTCGTCGTTCCCAACCACTTCCGGTGTCCGATTTCTCTCGATTTAATGAAAGACCCTGTCACATTGTCGACCGGAATCACCTACGATCGTGACAACATCGAAAGGTGGTTCCTTGACGGCAATCTCACCTGCCCTGTTACCAATCAGGTTCTCAGGAGCTTCGATCTCATTCCCAATCACACTATTCGCATCATGATTCAGGACTGGTGTGTTGAAAATCGACTACATGGGATCGAGAGAATCCCAACCCCAAGAATTCCCATTTCGCCAGCCCAAGTCGCCGAGCTTCTTCTTCATGTGAAATCGTCAGCGAGGCGTTTGGATCAATATGGTTGTCTTGAATTGGTTCAGAAAATGGAGAAATGGGGTGAAGAGAGCGAGAGAAACAAGAAGTGTATAGTTGAAAATGGAGCTACTGGTGCTCTGGCCTCTGCTTTTGATTCGTTTGCTCATGATTCGATTGAGAAGAATCTTAATGTTTTGGAGGAGATTTTGTCTGCTTTGAATTGGATGTTCCCACTTCAAATGGAAGAAGCCCAGAAATTTTTGGGATCACAAGCTTCGTTACGTTGCATGGTTTGGTTTCTGAAACATCAAGATCTCGCGGGGAAAGAGAAATCCATTGTTGCTCTCAGAGAGCTTTTATCTTTCAGAAACGAAGACCGTTTGAATGTTTTGGCAGAAATTGAAGGAGTCAGCGAATTATTGGTGGAAATTATCACAAAAAGACTGAGTCCGACCATTACAAAAGCTTCATTAGCAGTAGTTTTCTATATGGTTTCATCGCCTTCTTCTTCCTCAAGTAACAAGATGAAACAGAGATTCATCGAATTGGGGTTGGTCTCTGCTTTACTGGAGATTCTTCTGGATTCAGAAAGAAGCCTTTGTGAGAAGGCTTTGGCAATATTTGACTCACTCTGTTCTTGCAAGGAAGGAAGAGAGAAAGCTTACAATAACGCGTTGACGATCCCTGTGTTGGTGAAGAAGATACTTAGAGTTTCAGCTTTGGCTACAGAGTGCTCTGTTTCTTCAATATGGAAGCTGTGCAAGAATGGCGGAGAAGAGAAAGAAGAAGAAGAAGAAGGAGAAGGAGAAGGAGAAGGAGAAGTTATGGTAGAGGCACTGCAAGTTGGGGCGTTCCAGAAGCTTCTGGTTGTGTTGCAGATTGGGTGTGGAGATGAAACGAAAGTGAAAGCAACAGAGCTTCTGAAACTTCTGAATCGATATGGATCAGGCATGGAGTGCGTAGACTCAGATTTCAAGAACCTCCAGAGATCCCATTAA 1344 0.4397 MVLGWRRRKNCRHKDNLRLELVVPNHFRCPISLDLMKDPVTLSTGITYDRDNIERWFLDGNLTCPVTNQVLRSFDLIPNHTIRIMIQDWCVENRLHGIERIPTPRIPISPAQVAELLLHVKSSARRLDQYGCLELVQKMEKWGEESERNKKCIVENGATGALASAFDSFAHDSIEKNLNVLEEILSALNWMFPLQMEEAQKFLGSQASLRCMVWFLKHQDLAGKEKSIVALRELLSFRNEDRLNVLAEIEGVSELLVEIITKRLSPTITKASLAVVFYMVSSPSSSSSNKMKQRFIELGLVSALLEILLDSERSLCEKALAIFDSLCSCKEGREKAYNNALTIPVLVKKILRVSALATECSVSSIWKLCKNGGEEKEEEEEGEGEGEGEVMVEALQVGAFQKLLVVLQIGCGDETKVKATELLKLLNRYGSGMECVDSDFKNLQRSH 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g2410 447 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 99 IPR013083 -
Acco02g2410 447 ProSiteProfiles U-box domain profile. 22 96 IPR003613 GO:0004842|GO:0016567
Acco02g2410 447 CDD RING-Ubox_PUB 24 76 IPR045210 -
Acco02g2410 447 PANTHER WDSAM1 PROTEIN 21 435 IPR045185 GO:0061630
Acco02g2410 447 Pfam U-box domain 23 94 IPR003613 GO:0004842|GO:0016567
Acco02g2410 447 Gene3D - 144 286 IPR011989 -
Acco02g2410 447 FunFam RING-type E3 ubiquitin transferase 23 94 - -
Acco02g2410 447 Gene3D - 287 436 IPR011989 -
Acco02g2410 447 SUPERFAMILY ARM repeat 144 423 IPR016024 -
Acco02g2410 447 SUPERFAMILY RING/U-box 21 99 - -
Acco02g2410 447 SMART Ubox_2 26 89 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g2410 Acco-ChrAcco02 21576381 21577724 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g2410 20 445 U-box Gene Family AT5G37490 46.154 3.19e-117 348