Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g2400 ATGCCTTTCCAATACGTAATTCTTTATGAAATTTTGATTTGCAGTTGGAATAGAACCGGGTGTAACTTGTACTATTCTGGGGGTTTGGTCCGTGATTCAAGTCTCAGTTCACTGTTGGCGGAGACGAGCTTTGTGTGTGAAACATCACATACAATGAGCTTGCAAGTCCGACAGGAAAGAAGGGATCGGTCCAGGGTTCCTGCCCAAGGTTCTCGTCAGGAATGGGTTCCTAGAGCACCTGTGGCTGTGGCCACCATGGATTCGGCGCCATCAAATTATCCATTGGATCAAAATGTTAATGCTGGTTGCTCAGATAATAATGTTGTTCCACCAGGAAATCAGCATAGAAGCAGTCATGGGTCAAGGGGTCACACAAGTCGGCCTGTGAATCATAGAAGGGAAAGGAAAAGGGAAAAGGGGAGGAATGAGAATCAGGTGGTGCAAAGATCGAGGGACTCTGATTTGCCTCAATTGTTGCAAGAGATCCAGGATAAACTTATGAAAAGTACTGTAGAATGCATGATTTGTTATGACACGGTTCGTAGAACAGCACCCATCTGGTCTTGTTCAAGCTGCTACTCTATCTTTCACCTGAATTGTATAAAAAAGTGGGCTCGAGCACCTACTTCTGTTGATGTGTCTGCAGAAAAGAATCAAGGATTTAATTGGCGTTGTCCTGGTTGTCAATCTGTACAGCTGACATCGTCATGGGAGATTAGTTATGTATGCTTTTGTGGAAAGAGGCCAGACCCACCATCTGACATGTATCTCACACCACATTCTTGTGGAGAACCATGCGGGAAGCCTCTTGAGAAGGAGGTGTTGGTTAATGGAGGGAGAGTGAGCAAGGAAGATCTTTGCCCTCATGTTTGTGTTTTGCAATGTCATCCTGGTCCATGCCCCCCATGTAGAGCATTTGCACCGCCACGTTTGTGTCCTTGTGGGAAGAAAACTATTACCACACGCTGCTCTGATCGGTCCTCCGTTCTTACCTGTGGTCAAGTTTGTGATAAGCTTCTCGAGTGTGGGCGTCATAGGTGTGGACGCATTTGCCATGTGGGTCTGTGTGACCCATGTCATGTTCTAATCAATGCCTCTTGTTTCTGCAACAAGAAGGCGGAGGTTATTCTTTGTGGGGACATGGCTGTGAAGGGAGAAATTAAAGCTGAAGGTGGTGTATTTTCTTGTGGTTCTAAGTGTGGGAAGAAACTTAGTTGTGGTAATCATTTCTGCAATGAGATGTGTCATCCAGGTAACTGTGGGGAGTGTGAATTCTTACCAAGCCGGATTAAGACATGCTGTTGTGGGAAAACAAAATTGGAGGAGGAACGGCATAGTTGTCTAGATCCAGTACCAACCTGTTTGCAAGTATGTGACAAGCCTCTTCCTTGTGGGTTGCATCATTGTAGAGAGACATGTCATTCTGGGGATTGTTCACCATGTTCAGTTCTAGTCTCCCAAAAGTGTCGATGTGGTTCAACTTCTCGAACTGTGGAGTGCTATAGGGCAGTGGAGGAGGATGAGTCATTTACTTGTGAAAGATCTTGTGGGCGGAAAAAAAACTGTGGAAGACATCGATGTAGTGAGCGGTGTTGTCCACTTTCTAATCCAAATAATTGTCGGAATGGGGAGTGGGATCCTCACTTCTGCACCATGCCATGTGGAAAGAAGCTAAGGTGCGGGCAACATGCATGCGAATCACTATGTCACAGTGGCCATTGTCCACCTTGTCTTGAAACTATCTTCACTGATTTGACATGTGCTTGTGGTAGGACTTCAATCCCTCCTCCATTGCCTTGTGGCACACCCCCTCCCTCATGTCAACTTCCATGTTCAGTCCCTCAACCTTGTGGCCATTCAGCCTCCCACAGCTGCCACTTTGGAGATTGCCCACCTTGTTCAGTGCCTGTGGCAAAGGAGTGTATTGGTGGGCATGTGGTTCTTCGGAATATACCTTGTGGATCAAAGGATATTAGATGTAACAAACTCTGTGGGAAGACCAGACGGTGTGGTTTACATGCTTGTGGAAGAACATGTCACCCTTCACCTTGTGATGTTCCATCTAGTAGTGACCAAGGTATCAGAACTTCTTGTGGTCAAATATGTGGTGCCCCTAGGAGAGATTGCAGGCATACATGTACAGCTGCATGTCACCCTTTGGCACCATGCCCTGACATAAGATGTGAGTTCTCTGTTACAATTACTTGTTCTTGTGGCCGTATAACAGCAAATGTTCCTTGTGGTGCTGGTGGTAATTATAACTCTGATTCCATACATGAAGCTTCCATAATTCAAAAGTTGCCCGTGCCACTTCAACCAGTGGAAAACAGCAAATTGATTCCCCTTGGACAAAGAAAGCTGACGTGTGATGATGAATGTGCTAAGTTGGAGCGTAAGAAGGTTCTTGCTGATGCTTTTGATGTCACCACTCCAAACTTGGATTCTCTTCATTTTGGTGAAAACACTACTACTACAGAATTGCTGTCAGACATGCTCAGGCGTGATCCTAAGTGGGTTTTGTCTGTGGAGGAGAGATGCAAATATTTAGTTCTCGGCAAGAGCAAAGGAGTAACACATGGTTTGAAAGTCCATGTTTTCTGTCCTATGCTGAAGGATAAGAGAGATGCAGTGAGGGTTATTGCTGAGAGATGGAAGTTGGCAGTGAATGCTGCTGGTTGGGAGCCAAAGCGCTTTGTCACAGTACACGTTACTCCGAAGTCAAAGGCTCCTCCCCGTGTGCTTGGAGTTAAGGGCACTCCAGTGGGGAATATAGCATTGCCTCCACAATTTGATCCCTTGGTAGATATGGATCCCCGTCTTGTTGTCTCCTTTCCAGACTTACCAAGAGAAGCCGATATAAGTGCTTTAGTACTGAGGTTTGGCGGTGAATGTGAACTTGTTTGGTTGAATGATAAAAATGCATTGGCTGTTTTCCATGATCCTAACCGAGCTGCAACTGCGATGAGGAGGTTGGATCATGGAACAGCTTATCACGGGGCTGTAGTGGTTGTTCCAAATGCCGGGGCATCAGCAACATCATCGGTGGCTACCAATGCATGGGGAGGAGTTGGGACGTTGAAAGAAGGAGGAGCGCTGGCAGCATTGAAGGGGAATCCATGGAAAAAGGCCGTGGTTCAAGAGCCTGGCTGGAGAGAAGATTCTTGGGGTGATGAAGAGTGGACTACTGGGTCTGCTAATCTCCAGACTTCTGCCTGGACGAGAGAAACACCTAAAGTCCCAATCACTGCTTCGTTGAATCGGTGGAGTGTCTTAGACCATGAATCATCTTCAAGATCAGCTGCTGCTACCATTAGAACTGAAGCTCCTCGGAAACACTCCCCAAGTTCATCTTCTGCCGGGAAGCTGGAATCTGAAGCCGGTGGATCTGTTCAAGGAAATGCGAATGCAACAGAAGCTTCCGAAGTAGTAGATGATTGGGAGCAAGCTTATGAATGA 3456 0.4644 MPFQYVILYEILICSWNRTGCNLYYSGGLVRDSSLSSLLAETSFVCETSHTMSLQVRQERRDRSRVPAQGSRQEWVPRAPVAVATMDSAPSNYPLDQNVNAGCSDNNVVPPGNQHRSSHGSRGHTSRPVNHRRERKREKGRNENQVVQRSRDSDLPQLLQEIQDKLMKSTVECMICYDTVRRTAPIWSCSSCYSIFHLNCIKKWARAPTSVDVSAEKNQGFNWRCPGCQSVQLTSSWEISYVCFCGKRPDPPSDMYLTPHSCGEPCGKPLEKEVLVNGGRVSKEDLCPHVCVLQCHPGPCPPCRAFAPPRLCPCGKKTITTRCSDRSSVLTCGQVCDKLLECGRHRCGRICHVGLCDPCHVLINASCFCNKKAEVILCGDMAVKGEIKAEGGVFSCGSKCGKKLSCGNHFCNEMCHPGNCGECEFLPSRIKTCCCGKTKLEEERHSCLDPVPTCLQVCDKPLPCGLHHCRETCHSGDCSPCSVLVSQKCRCGSTSRTVECYRAVEEDESFTCERSCGRKKNCGRHRCSERCCPLSNPNNCRNGEWDPHFCTMPCGKKLRCGQHACESLCHSGHCPPCLETIFTDLTCACGRTSIPPPLPCGTPPPSCQLPCSVPQPCGHSASHSCHFGDCPPCSVPVAKECIGGHVVLRNIPCGSKDIRCNKLCGKTRRCGLHACGRTCHPSPCDVPSSSDQGIRTSCGQICGAPRRDCRHTCTAACHPLAPCPDIRCEFSVTITCSCGRITANVPCGAGGNYNSDSIHEASIIQKLPVPLQPVENSKLIPLGQRKLTCDDECAKLERKKVLADAFDVTTPNLDSLHFGENTTTTELLSDMLRRDPKWVLSVEERCKYLVLGKSKGVTHGLKVHVFCPMLKDKRDAVRVIAERWKLAVNAAGWEPKRFVTVHVTPKSKAPPRVLGVKGTPVGNIALPPQFDPLVDMDPRLVVSFPDLPREADISALVLRFGGECELVWLNDKNALAVFHDPNRAATAMRRLDHGTAYHGAVVVVPNAGASATSSVATNAWGGVGTLKEGGALAALKGNPWKKAVVQEPGWREDSWGDEEWTTGSANLQTSAWTRETPKVPITASLNRWSVLDHESSSRSAAATIRTEAPRKHSPSSSSAGKLESEAGGSVQGNANATEASEVVDDWEQAYE 1151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g2400 1151 CDD NF-X1-zinc-finger 332 380 - -
Acco02g2400 1151 SMART znfxneu3 342 361 IPR000967 GO:0005634|GO:0008270
Acco02g2400 1151 SMART znfxneu3 670 700 IPR000967 GO:0005634|GO:0008270
Acco02g2400 1151 SMART znfxneu3 464 483 IPR000967 GO:0005634|GO:0008270
Acco02g2400 1151 SMART znfxneu3 617 635 IPR000967 GO:0005634|GO:0008270
Acco02g2400 1151 SMART znfxneu3 287 305 IPR000967 GO:0005634|GO:0008270
Acco02g2400 1151 SMART znfxneu3 560 579 IPR000967 GO:0005634|GO:0008270
Acco02g2400 1151 SMART znfxneu3 709 730 IPR000967 GO:0005634|GO:0008270
Acco02g2400 1151 SMART znfxneu3 522 552 IPR000967 GO:0005634|GO:0008270
Acco02g2400 1151 SMART znfxneu3 406 425 IPR000967 GO:0005634|GO:0008270
Acco02g2400 1151 MobiDBLite consensus disorder prediction 90 119 - -
Acco02g2400 1151 PANTHER NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1 113 1058 IPR034078 GO:0003700
Acco02g2400 1151 MobiDBLite consensus disorder prediction 120 135 - -
Acco02g2400 1151 CDD NF-X1-zinc-finger 550 593 - -
Acco02g2400 1151 MobiDBLite consensus disorder prediction 1045 1067 - -
Acco02g2400 1151 ProSiteProfiles Zinc finger PHD-type profile. 170 231 IPR019787 -
Acco02g2400 1151 ProSiteProfiles Zinc finger RING-type profile. 173 229 IPR001841 -
Acco02g2400 1151 Pfam NF-X1 type zinc finger 617 634 IPR000967 GO:0005634|GO:0008270
Acco02g2400 1151 Pfam NF-X1 type zinc finger 670 685 IPR000967 GO:0005634|GO:0008270
Acco02g2400 1151 Pfam NF-X1 type zinc finger 406 423 IPR000967 GO:0005634|GO:0008270
Acco02g2400 1151 Pfam NF-X1 type zinc finger 522 533 IPR000967 GO:0005634|GO:0008270
Acco02g2400 1151 Pfam NF-X1 type zinc finger 342 359 IPR000967 GO:0005634|GO:0008270
Acco02g2400 1151 Pfam NF-X1 type zinc finger 702 724 IPR000967 GO:0005634|GO:0008270
Acco02g2400 1151 Pfam NF-X1 type zinc finger 289 304 IPR000967 GO:0005634|GO:0008270
Acco02g2400 1151 Pfam NF-X1 type zinc finger 464 482 IPR000967 GO:0005634|GO:0008270
Acco02g2400 1151 Pfam NF-X1 type zinc finger 560 577 IPR000967 GO:0005634|GO:0008270
Acco02g2400 1151 CDD NF-X1-zinc-finger 454 502 - -
Acco02g2400 1151 CDD NF-X1-zinc-finger 607 655 - -
Acco02g2400 1151 MobiDBLite consensus disorder prediction 55 155 - -
Acco02g2400 1151 MobiDBLite consensus disorder prediction 1096 1151 - -
Acco02g2400 1151 CDD RING-CH-C4HC3_NFX1-like 172 229 - -
Acco02g2400 1151 SUPERFAMILY RING/U-box 163 232 - -
Acco02g2400 1151 CDD NF-X1-zinc-finger 262 325 - -
Acco02g2400 1151 CDD NF-X1-zinc-finger 396 441 - -
Acco02g2400 1151 MobiDBLite consensus disorder prediction 1096 1138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g2400 Acco-ChrAcco02 21453604 21457059 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-X1 Acco02g2400 zf-NF-X1 0.002 No_clan