Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g2320 ATGGCCAGGATTAAGATATGTCGTTCCGTTCAGGCTCTTTGGAATGGATGGATTTCAGCTTCTCTTACTTCTAGCTCGCCTCGCTTTCAGAGTTCAGTAAAGCTTGATGGGGCTCTCAAACGGCTTTCTTGCATCTTGATTCCTTTTATCGCCAAAGCTGAATTAGCTCCGATATTACGATCAGGACAAAAAATTGTGGGGGCGAAAATGTCAGAAATAGATACGTCTAAGAAAGTAGCCGATAGATATCTGAGGCGTGAAGTCCTCGGTGAAGGTACCTATGGAGTTGTATACAAAGCCATTGATACAAAGACAGGGCAGACGGTTGCAATTAAGAAAATTCGACTTGGCAAGCAGAAGGAAGGGATCAATTTTACAGCTCTTAGAGAGATTAAACTGCTCAAAGAGCTAAAAAATCCCAATATTATTGAGTTAATTGATGCATTCCCACATAAAGGGAATTTGCATCTCGTTTTTGAATTCATGGAGACAGACCTTGAAGCTGTTATACGAGATCGGAATATTTTTCTTTCACCAGCTGATATAAAATCCTACCTTCAAATGACACTTAAAGGTCTTGCTTTTTGCCATAAGAAATGGGTTTTGCATAGGGATGTGAAGCCAAATAACTTGTTGATAGGACCAAATGGACAGCTGAAACTTGCAGATTTTGGTTTAGCAAGGGTATTTGGGAGCCCAGATCGAAGGTTTACTCATCAGGTGTTCGCTCGGTGGTATAGAGCACCTGAGCTGTTATTTGGGGCTAAACAGTATGGTTCAGGGGTTGATGTTTGGGCTGCAGCCTGTATATTTGCTGAACTTCTGCTTCGTCGACCCTTTTTGCAGGGTTTAAGTGATATTGATCAATTAGGAAAGATTTTTGCTGCATTTGGGACTCCAACGCCTTCTCAGTGGGCTGATATAGTATACCTTCCTGATTATGTTGAATACCAATATGTTCCAGCTCCTCCTTTGCGTTCTCTATTCCCAATGGCAAGTGATGATGCTTTAGATTTGTTGTCAAAGATGTTTACATATGATCCTAAAGTTAGAATTTCAGTGCAGCAGGCGTTAGAGCACAGGTATTTTTCCTCCGTGCCTCTGCCCACAGATCCTGATAAGCTTCCTAGACCTGCCCCAAAGAAGGATCTTAAGGCTTCTGATTTCAATCCACATGAGGGTCCAACTGTTTTATCACCTCCTAGAAAGTCTAGGAGAGTGATGCCAGGGCGTGATGGATATGAGGGAAATGCATTACAAGGAGGTAAAGTTGACGATAATATTGGTGATTACATGCAAAAGGCTGGTGATAATACAGGCAAGAATGATCCAGCCGCAACGTCAGTAGACTTTTCTATATTTGGATTGAATCCTCCAAATAGGCCTACAATTAACAGTGCTGACAGATCACATCTGAAAAGAAAATTAGATCTAGAATTTTAG 1443 0.4144 MARIKICRSVQALWNGWISASLTSSSPRFQSSVKLDGALKRLSCILIPFIAKAELAPILRSGQKIVGAKMSEIDTSKKVADRYLRREVLGEGTYGVVYKAIDTKTGQTVAIKKIRLGKQKEGINFTALREIKLLKELKNPNIIELIDAFPHKGNLHLVFEFMETDLEAVIRDRNIFLSPADIKSYLQMTLKGLAFCHKKWVLHRDVKPNNLLIGPNGQLKLADFGLARVFGSPDRRFTHQVFARWYRAPELLFGAKQYGSGVDVWAAACIFAELLLRRPFLQGLSDIDQLGKIFAAFGTPTPSQWADIVYLPDYVEYQYVPAPPLRSLFPMASDDALDLLSKMFTYDPKVRISVQQALEHRYFSSVPLPTDPDKLPRPAPKKDLKASDFNPHEGPTVLSPPRKSRRVMPGRDGYEGNALQGGKVDDNIGDYMQKAGDNTGKNDPAATSVDFSIFGLNPPNRPTINSADRSHLKRKLDLEF 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g2320 480 CDD STKc_CDK7 82 376 IPR037770 GO:0005675|GO:0008353|GO:0070985
Acco02g2320 480 ProSiteProfiles Protein kinase domain profile. 83 363 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco02g2320 480 PANTHER CELL DIVISION PROTEIN KINASE 81 369 - -
Acco02g2320 480 MobiDBLite consensus disorder prediction 365 425 - -
Acco02g2320 480 FunFam Putative cyclin-dependent kinase 7 164 379 - -
Acco02g2320 480 Gene3D Phosphorylase Kinase; domain 1 73 163 - -
Acco02g2320 480 SMART serkin_6 83 363 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco02g2320 480 MobiDBLite consensus disorder prediction 455 480 - -
Acco02g2320 480 FunFam Cyclin-dependent kinase D-1 74 163 - -
Acco02g2320 480 ProSitePatterns Protein kinases ATP-binding region signature. 89 113 IPR017441 GO:0005524
Acco02g2320 480 Pfam Protein kinase domain 85 363 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco02g2320 480 Gene3D Transferase(Phosphotransferase) domain 1 164 379 - -
Acco02g2320 480 ProSitePatterns Serine/Threonine protein kinases active-site signature. 201 213 IPR008271 GO:0004672|GO:0006468
Acco02g2320 480 MobiDBLite consensus disorder prediction 375 389 - -
Acco02g2320 480 SUPERFAMILY Protein kinase-like (PK-like) 78 371 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g2320 Acco-ChrAcco02 20412993 20416831 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g2320 77 480 Core Cell Cycle Gene Families AT1G18040 75.248 0.0 613
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CDK7 Acco02g2320 Pkinase 1.4e-70 CL0016