Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g2302 ATGCCTGTCGTTTCAGATGCTTCTGCAACTGCAGAACGCATGAAATGCAGAAGACCAAGAAGCCATTTTGGTCATCTCATTCAAGAAGCAGATCCGAATCCGCCTATCCCATCAATAATTGAGTTCACTCACTGCAAGTCAACCATCTCGTCTCTTCTTCTCTCTACTTTCTCTAACAACTCGACGAATGAAAGTATACAGAGCAACGGCATCAACATCGCCGGCAGTGGCCGTAGCAAGAAGAAGAACAATTTCTCGGCGGCTGCAACCTTCAGAGGGCTCGGATGCACAGCCGGTGCAGCGCAGCAGGTTTCCGTTCCGGCGGTGATTCGGACGTCGGCGGACTGGCAAGGAAAGAAGGCTAGAAAGAAGAAGCACAAAAGAAATGGCACCAAGACCTGCCCTGGTGTTCTTGATGGTTCTGGTTCTGGTTCTGCTAATTGCGTTGATTTTCAAGATGTTTGGTGTGGTCCTGGAATTGGGTTTTCTTCAGATGCTGCTGCTTCTGTTGATTGCGTCGTGGCGAGGAAGAATGTTTCTTCAAGAGGCAAGATTGATGTGGAGAGGATGACTCACAGAGAGCGAGTATCCTATCTTGGAAGGCGAACAGTTAACCCAGAAACCATCTCGTTTCTGGATAATGATCCTGATATCTTCCCAACTCGTCCTCCTGCTCCTGATCCCTATGCAACTTCAAGATATTATCGTCATGTTCGACATCCTTCATCCGAAGGTTTCGCTGAGATAATGATGCTTCAAGGAGGTCTGCTAATGGGAGGAATATTAGATTCACATGACCAATTTAGAGACTGGAGACTTGATGTTGATAACATGTCATATGAGCAACTGCTTGAGCTTGAAGAGAAGATTGGTTATGTCAATACTGGTCTTAAAGAAGACGAGATAGGATGCCACATAAGGAAAATTCGATATCCATTTTTGAGCGAAGCGTTGAAGCACCATATTAACAAAAAGTGCAGCATTTGTCAGGAAGAATATGAAGGAGATGATGAGGTGGGGAAGCTAAATTGTGAACATTATTATCACTTTGAGTGCATTAGACAATGGCTTGCACAGAAGAACTTCTGCCCTGTCTGTAAGCAAGAAGTTGTGGTTCGTCATTAG 1125 0.4516 MPVVSDASATAERMKCRRPRSHFGHLIQEADPNPPIPSIIEFTHCKSTISSLLLSTFSNNSTNESIQSNGINIAGSGRSKKKNNFSAAATFRGLGCTAGAAQQVSVPAVIRTSADWQGKKARKKKHKRNGTKTCPGVLDGSGSGSANCVDFQDVWCGPGIGFSSDAAASVDCVVARKNVSSRGKIDVERMTHRERVSYLGRRTVNPETISFLDNDPDIFPTRPPAPDPYATSRYYRHVRHPSSEGFAEIMMLQGGLLMGGILDSHDQFRDWRLDVDNMSYEQLLELEEKIGYVNTGLKEDEIGCHIRKIRYPFLSEALKHHINKKCSICQEEYEGDDEVGKLNCEHYYHFECIRQWLAQKNFCPVCKQEVVVRH 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g2302 374 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 143 370 IPR045191 GO:0061630
Acco02g2302 374 Pfam Ring finger domain 325 367 IPR001841 -
Acco02g2302 374 ProSiteProfiles Zinc finger RING-type profile. 326 367 IPR001841 -
Acco02g2302 374 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 305 373 IPR013083 -
Acco02g2302 374 SUPERFAMILY RING/U-box 325 372 - -
Acco02g2302 374 FunFam E3 ubiquitin-protein ligase rnf12-A 293 372 - -
Acco02g2302 374 SMART ring_2 326 366 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g2302 Acco-ChrAcco02 20076904 20080716 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g2302 2 281 C3H Transcription Factor Family AT1G73760 40.066 2.54e-51 171