Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g2246 ATGGATGAAAAGAATCTACCTCCAGGATTCAGATTCCACCCCACAGACGAAGAGCTCATAAATTATTATCTAAAGAGTAAAGTTTGTGATGCTAATGGCTTCACTTGCAGAGCTATAGCAGTGGTTGATCTCAACAAGTCTGAACCTTGGGACCTTCCAGGTAAGGCATCGATGGGACAGAAGCTATGGTATTTCTTCAGTTTAAAAGACAGGAAATACCCAACAGGACTTCGAACCAACCGAGCTACAGAATCCGGCTACTGGAAAACCACCGGCAAAGACAAACACATCTTCCACGGTGGCGCATTGATCGGCTTCAAGAAAACCCTCGTCTTCTACCAAGGAAGAGCTCCACGTGGCCTCAAAAGCAATTGGGTTATGCATGAATATCGTCTCCACAATAGTAACACCCATTTCACACCCTCCAAGGAAGAATGGGTAGTTTGCAGGGTGTTCCAAAAGAGCATACCAGCAGCCAAAAAACCTCATCAGGAGATGACATCATCATCTTTAGATTCACCTAATTGCGAAGCAACCTCAATGGTGAATGAACTGGGTGACGTGGTGGAACTTGCTAATTTTAGTACTAGTCTTGCAAATTCCTCAACAGGATTCACCACAAACAACGTTAATAATGGCGATCACATCAGTAATGTAAACACAAACATGAACTTGAGCAACAATTATTGGTCATCATCAGCTGACCAAGTTCCCTCTCTTGTTCCCTGGCCTAATAGTACAGCATCTCGAGGGTTAATGCTTAATAATCCCAATCTGTCATCAGTGAACTCATTGCTTCTCAAAGCATTGCAGCTCAAGAGCTATCATCAGCAGCAGCAAGTTCATGATCAGTTTGTTGCATCATCGTACATGTCATCTCAAGCTGTTTCCAACGTTGGAGGAACCACTGATCATGTCATCATCTCAAATCCCAGTGCTTCTCAGCAGCACCTGCCCTTCGATCTCGACTCTCTGTTTCCTGCGTCAGTAACAATGGCGGGAAAACAAATTTCTGGCGACGGCTTGTCGGCGAACCTCGCCGGGATGTCCAAGAACCAGCTATATGAGATCATGTCCCAGATGAAGAATCTAATCGAACAAAACCAGCAGCAAGCGAGGCAGATCCTCATTCAGAATCCGATGTTAACTAAAGCGCTTTTTCAGGCACAAATTATGCTTGGAATGGTGCAGCCCCCTCCAGTGGTTCCGAAAATTCAGCCAACAGTCTCACAGAGCAGTCAGCAGCCAGTACAGTTGACGCAACAGCCAAACATTCAGCCTCCTCCATTTTTTCCTGGGCAAGGTGGTCTACATGATCAAGCAAGTGTATCTCAAAACCAAATTCCTCCTAGGAAACTCCAAAACCAACCTTCAGTGCCTATCTCATCTGCTGCTATCCCTTCAGCAAGTCATCAATCTCAGCCCTTGCCTGCAAATTCTTTGCAGGTGCCACAGCAACCAAAAGGACATCTGAATCCTCAAATGGCCCATGTGTCTCTTCCACAATCATCACAGCTTCCTAATGTACCTCCATCCTCTCTACATTCATCTTCACAGCCCCATCGAACCCAAATTCCAAACGTTTCCACTCAATTGCAGCAACCATTGCAGGCACCTGGATTTCCACATGTGCCACTGCAACCACCAATGCAATCGCAGCCTAGACCACCTTCAGGACCCAACTTCCATCACCAGTACCCCCCACAAATGGGTGCCAATATAGGTTTTCCGCATGCTAGTGGTCCCCACAATCTTCCGCAACCCATGTTTCATCCAGGTGCAAAGCCAGCAAGTGTCGGACCATCATTTCCACAGGGCCCGACTCCAATTCCAAGTCAACCAGCTATCCAGTCACCTTATCAGGTTGGGGGAGCTGGAAATGCGGTGCCAGTTGATAGAGGGTCTTCCAGGATACCTGGTCTCTCGGAAAACATGACACAACTTTCCGGTCCTTTGGGACCTCCACCATTAGTCCCTGGTCAGATGGGCGTTGGCAATCAGCCTCTAAGGCCTCCTTCCTTGACACCTGAGATGGAGAAGGCACTACTTCAGCAGGTCATGAGCCTCACTCCAGAGCAGATAAATCTCCTGCCTCCAGAACAAAGGAGTCAAGTGCTACAGCTACAACAAATGTTGAGCCAATGA 2145 0.4713 MDEKNLPPGFRFHPTDEELINYYLKSKVCDANGFTCRAIAVVDLNKSEPWDLPGKASMGQKLWYFFSLKDRKYPTGLRTNRATESGYWKTTGKDKHIFHGGALIGFKKTLVFYQGRAPRGLKSNWVMHEYRLHNSNTHFTPSKEEWVVCRVFQKSIPAAKKPHQEMTSSSLDSPNCEATSMVNELGDVVELANFSTSLANSSTGFTTNNVNNGDHISNVNTNMNLSNNYWSSSADQVPSLVPWPNSTASRGLMLNNPNLSSVNSLLLKALQLKSYHQQQQVHDQFVASSYMSSQAVSNVGGTTDHVIISNPSASQQHLPFDLDSLFPASVTMAGKQISGDGLSANLAGMSKNQLYEIMSQMKNLIEQNQQQARQILIQNPMLTKALFQAQIMLGMVQPPPVVPKIQPTVSQSSQQPVQLTQQPNIQPPPFFPGQGGLHDQASVSQNQIPPRKLQNQPSVPISSAAIPSASHQSQPLPANSLQVPQQPKGHLNPQMAHVSLPQSSQLPNVPPSSLHSSSQPHRTQIPNVSTQLQQPLQAPGFPHVPLQPPMQSQPRPPSGPNFHHQYPPQMGANIGFPHASGPHNLPQPMFHPGAKPASVGPSFPQGPTPIPSQPAIQSPYQVGGAGNAVPVDRGSSRIPGLSENMTQLSGPLGPPPLVPGQMGVGNQPLRPPSLTPEMEKALLQQVMSLTPEQINLLPPEQRSQVLQLQQMLSQ 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g2246 714 MobiDBLite consensus disorder prediction 404 443 - -
Acco02g2246 714 Gene3D NAC domain 15 156 IPR036093 GO:0003677|GO:0006355
Acco02g2246 714 Pfam No apical meristem (NAM) protein 7 132 IPR003441 GO:0003677|GO:0006355
Acco02g2246 714 Pfam Transcription termination and cleavage factor C-terminal 680 714 IPR026896 GO:0031124
Acco02g2246 714 MobiDBLite consensus disorder prediction 496 537 - -
Acco02g2246 714 Pfam Hinge domain of cleavage stimulation factor subunit 2 335 398 IPR025742 -
Acco02g2246 714 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN 332 714 - -
Acco02g2246 714 MobiDBLite consensus disorder prediction 466 489 - -
Acco02g2246 714 MobiDBLite consensus disorder prediction 541 563 - -
Acco02g2246 714 SUPERFAMILY NAC domain 3 154 IPR036093 GO:0003677|GO:0006355
Acco02g2246 714 FunFam Cleavage stimulation factor subunit 2 673 714 - -
Acco02g2246 714 MobiDBLite consensus disorder prediction 406 421 - -
Acco02g2246 714 FunFam NAC domain-containing protein 100-like 15 158 - -
Acco02g2246 714 Gene3D - 675 714 IPR038192 -
Acco02g2246 714 Gene3D - 329 402 - -
Acco02g2246 714 ProSiteProfiles NAC domain profile. 6 154 IPR003441 GO:0003677|GO:0006355
Acco02g2246 714 MobiDBLite consensus disorder prediction 466 566 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g2246 Acco-ChrAcco02 19338610 19347508 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g2246 3 326 NAC Transcription Factor Family AT3G18400 50.000 2.07e-89 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Acco02g2246 NAM 2.8e-37 No_clan