Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g2153 ATGACCACCACCACCACTTCTTCTCAGATCCTTCAACACACCACCGCTTTCCTCTCCGACGTCCTTTCGCATTCCGAACTCCGACGTCGCCTCATTTCCACCCTCTTTCGCCACTCTTCAATCTCCAACCAAATCACCCTCAAACACCTCAATCTCGCTGCGGACACTCTCGATAATGCTATCTCCGTCTCCAACCCCACCATCCGAACCTCCTCCCTCACCCTCACCGAGAAGCTCCTCCTCCCTCTCCCTCAGAATCCCATTTCGTCTTTCCTTCTATCTCTCATATACACCATCAACAAACGACAAGTCGAAGCCACCTTAAGTCTACTTCAACTCTTTTGTTTAAGCCCTTCGTTGGCCCGATCGGAAATCGCTCCGATTCTCTACGAGCAGCTGTTTTCTCTCCACCTCCTCCCTGTTTTTCGATCCTTCGATGAACAGAGAGCCAAAATACTGCCATCTACATCTGAAAATTCAGCTCGCTACCCAGATGATTATTCAATTTTTGAACAATCTGTTGTCTTACCCCCGACGAAGTTGTTATCGCGGATGAGCGACGGTCAGGCCTCGAAGCTGAGGGAACTGGAGAGAGACTACGAAGAGGCAATTGATGACAATTGCAGGATTGTTGCCGATTACTTCAAACAAGTTTTGATGAATAATACTGGCGACTCATCAATTAGTCCACCATTGTCGATTCTGAAGAACAGTAGAGATGACGCAGAAATGGAGCATAGCCAGGAGGAGATAGTGGAAACAAATACGCCTTTGTTTAAGAACGGACGGTATAATCCAATTTGGACCGAAAGTGAAACGTATACTGAATTTTCAAGTAGCAGTTTCAACGCCAAGTACTTGAATGCACCGTTTTACCCCCAAAGAGTCTCTACCAAAATCCTCAAACACCAAGAAACTTCTACAAAACTGTCCTTACCATCTCGTTCAGACATAGATGCTGAAACTGAGTCTTCCGAGGATGAACTTATGCCTTGTCATTCGTCAGAATCTGAGGCAGAAACTAAGGAAAAAGACACGATGGTACCACTGGAGCCTCGAGGAAGCCAAATCCTAGAATCTTTTCAGATTGATACTGCAGAACCCGGAGGTTCCCCAGATTACACCATGGCAGATTATGATCACCAGCCGCCTGGAAATGGAAAATGTGCGCCTCCCAAGGACTTTGTCTGTCCAATAACTAGCAATCTATTTGATGATCCAGTGACTCTTGAGACAGGACAGACATATGAACGGAAAGCTATCGAAGAATGGTTCAACAGAGGGAACTCAACCTGTCCAATCACCCGCCAGAAGCTGCAAAATACCCAACTGCCTAAAACAAATTATGTGCTCAAACGACTAATTGCGAGCTGGAAAGAACAGAATCCTAATTCAATACCATCTCCATCTCCATCTCCATCTGAGAGTTTACATGCTGAAACTGAGGTAGCAATTAAGTCAACAACGCCTTCAACTTCTCCTAATAGTGTTATAACACAAGCCAGTGTTGATGGGATGATTATCGAGTTAAGACATGCAATTAACAACCTGTATATGTCAGAGATGCTCGAGGAGTCTGAAATGGCTGTGCTTCAAATTGAGCAATTTTGGAAAGAAGCAAACCTGGGAGTGGATATCCAGAGCATGTTATCAAAACCTCCAATCATTAATGGGTTCATGGAGATTCTATTTAATTCTGTTGATCCCCAGGTGCTTCAAGCAACAGTTTTTCTTCTGGCCGAGATGGGTTCTAGGGACAATGCTGTTATTCAGACGCTTACCCGAGTGGACTCGGATGTCGAATGTATTATGGCGCTTTTCAAGAAAGGCTTGACAGAGGCTGTTGTATTAATATATCTCCTGAAGCCTTCAACTACGACTCTTGCAGAAATGGCCATATTGGAGTCTCTCATAACAGTTTTTGATAAGAAAGAGGAGGACTTGCTTAATATGTGCATAAAGCCCAAGACAGCTGCGGTACTCATACTGGCACAGATTCTTGGAAGCAATGACGATAGAATTGCATCTTCCGTAGCCTATACTTTGATGAAGGGTAGGGTAATTGGATATATAGTTGGCAGTTTTCGAGCTGAGTGGGCTGAGGAGAGGATTGCTGCAGTGGAGATCTTATTAAGATGCATCCAGGAGGATGGAACTTGCAGGCATCTCATTGCTGAAAAAGTTGAGCTGTCTCCCATTTTGGAAAGCTTCATTGGGGCGAAAGATGCAGAACGTTTTAAGACAATTCAATTTTTTACTGAGTTAGTCAAATTAAATAGGAGGACATTCAATGAACAAATCCTCCATATTATAAAGGAAGAAGGTGCTTTCAGTACAATGCACACTTTCCTAGCTTATATGCAGACAGCCGTTCAAGATCAATCTCCAGTAGTGGCTGGCCTTCTGCTCCAACTTGATCTTCTGGTAGAACCAAGAAAGATGAGTATATACCGTGAAGAGGCTATAGATACTCTTATTTCATGCCTCAGAAACAATGATTTTCCGGCTACCCAAGTAGTAGCTGCTGAGACAATAGTGTCATTACAAGGGAGATTCAACTTTGCTGGAAAGCCTCTTATTAGAGAAGTCCTTCTCAACCGTGCCGGCTTTAACAGAAGTCGTAGAAGTCTTGATCAGATGGATCATATCAGCAATATCAGTGGAGAACTTGAAATGAATCCAGAAGAAGAGAAGGCAGCTGATGATTGGGAGAGAAAAGTTGCGTCTGTTTTAGTTGGCCATGAGTTTGGTCTAATTTTTGAGGCTTTAGCTGAAGGCGTTAGAAGCCGAAGTACACAACTAAGTTCAACATGTTTTATATCAGCTACATGGCTTACATACATGCTTAGCGTTCTACCAGATACAGGAATACGAGGAGCAGCCTGTGTCTGCATGCTCAAGCGCTTTGTATCTATTTTAAAATCTGCCAAGGACACTGAAGATAGAATCCTTGCTATGCTTGCCTTAAATAGCTTTCTTCAGTACCCTGATGGATTGCTGGATCTTACTTCCTACACTAAGGATGTCCTAAAAGGTCTGAGAGAGCTAAAGAGATACTCCCCTCTGGCATCTGAATTGCTTAAAGTTTTGGTAGAAGAGAATGAATCTAAAGCTGGCATCTGGACGCATAAAGAGTTATTTCAGGTAGATTGCAGTGAGAATGGAGAATTGTTGTCTGTCATTTCTAATAAGGATAAAATTTTCTCAGGCCATTCAGATGGAACTATCAAGGTTTGGATAGTAAGGGGGAGCTCATTCCATCTGATACAAGAGACGCAAGAACACATGAAGGCGGTTTCATGTTTAGCAATATCAGAATCTGGTGACAAACTATACAGTGGTTCACTTGATCGATCAGTAAAGATCTGGTCTATAGGAAAGTCAGCAATACAGTGTGTACAGATGCATGATATGAAAGTCCAGATTCATAATTTAGCTGTAGCCGATAGCAAATTCTGCTACATTCCTCATGGAAACGGTGTTAAGGTTCAATCATTGAATGGAGAATCGAGGCTGTTAAACAGTAACAAATACGTCAGGTCATTGGCTCTTGCTCATGAGAGGCTATACTGTGGATGCCATGACAACAGTATTCAGGAGATAGATTTCGAAACAGGAACAGTCAATACCATTCAAAGTGGTTCTAAAAGATTGCTTGGTAAAGCAAATCCCGTCTATGCCCTGCAAATTCGTGGTGAGCATATATATGCAGCCAGTTCTTCCTTGGATGGAGCCGTTATAAAGATATGGGACACTTCCAATTACAGTTTGATTGGATCACTGGTAGTTGCATCAGAAGTGAGGACGATGGCAATTAGTTCAGAATTAATTTACTTGGGATGCAAGGGAGGAGCTGTGGAAATCTGGGATAGGAAGAAACAGAACAGAATTGATACATTACAGATTGGTACAAATGGTAGGATTGCTTGCATGGCTGTCGATGGAAATGAAGAAATTTTGGTCATTGGAACCTCTGATGGCCGAATTCAGGCATGGGGAATAAACTAA 4008 0.4289 MTTTTTSSQILQHTTAFLSDVLSHSELRRRLISTLFRHSSISNQITLKHLNLAADTLDNAISVSNPTIRTSSLTLTEKLLLPLPQNPISSFLLSLIYTINKRQVEATLSLLQLFCLSPSLARSEIAPILYEQLFSLHLLPVFRSFDEQRAKILPSTSENSARYPDDYSIFEQSVVLPPTKLLSRMSDGQASKLRELERDYEEAIDDNCRIVADYFKQVLMNNTGDSSISPPLSILKNSRDDAEMEHSQEEIVETNTPLFKNGRYNPIWTESETYTEFSSSSFNAKYLNAPFYPQRVSTKILKHQETSTKLSLPSRSDIDAETESSEDELMPCHSSESEAETKEKDTMVPLEPRGSQILESFQIDTAEPGGSPDYTMADYDHQPPGNGKCAPPKDFVCPITSNLFDDPVTLETGQTYERKAIEEWFNRGNSTCPITRQKLQNTQLPKTNYVLKRLIASWKEQNPNSIPSPSPSPSESLHAETEVAIKSTTPSTSPNSVITQASVDGMIIELRHAINNLYMSEMLEESEMAVLQIEQFWKEANLGVDIQSMLSKPPIINGFMEILFNSVDPQVLQATVFLLAEMGSRDNAVIQTLTRVDSDVECIMALFKKGLTEAVVLIYLLKPSTTTLAEMAILESLITVFDKKEEDLLNMCIKPKTAAVLILAQILGSNDDRIASSVAYTLMKGRVIGYIVGSFRAEWAEERIAAVEILLRCIQEDGTCRHLIAEKVELSPILESFIGAKDAERFKTIQFFTELVKLNRRTFNEQILHIIKEEGAFSTMHTFLAYMQTAVQDQSPVVAGLLLQLDLLVEPRKMSIYREEAIDTLISCLRNNDFPATQVVAAETIVSLQGRFNFAGKPLIREVLLNRAGFNRSRRSLDQMDHISNISGELEMNPEEEKAADDWERKVASVLVGHEFGLIFEALAEGVRSRSTQLSSTCFISATWLTYMLSVLPDTGIRGAACVCMLKRFVSILKSAKDTEDRILAMLALNSFLQYPDGLLDLTSYTKDVLKGLRELKRYSPLASELLKVLVEENESKAGIWTHKELFQVDCSENGELLSVISNKDKIFSGHSDGTIKVWIVRGSSFHLIQETQEHMKAVSCLAISESGDKLYSGSLDRSVKIWSIGKSAIQCVQMHDMKVQIHNLAVADSKFCYIPHGNGVKVQSLNGESRLLNSNKYVRSLALAHERLYCGCHDNSIQEIDFETGTVNTIQSGSKRLLGKANPVYALQIRGEHIYAASSSLDGAVIKIWDTSNYSLIGSLVVASEVRTMAISSELIYLGCKGGAVEIWDRKKQNRIDTLQIGTNGRIACMAVDGNEEILVIGTSDGRIQAWGIN 1335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g2153 1335 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 378 467 IPR013083 -
Acco02g2153 1335 Pfam U-box domain 392 462 IPR003613 GO:0004842|GO:0016567
Acco02g2153 1335 CDD RING-Ubox_PUB 392 444 IPR045210 -
Acco02g2153 1335 Pfam WD domain, G-beta repeat 1091 1124 IPR001680 GO:0005515
Acco02g2153 1335 Gene3D - 1014 1162 IPR015943 GO:0005515
Acco02g2153 1335 SUPERFAMILY ARM repeat 515 1034 IPR016024 -
Acco02g2153 1335 Coils Coil 186 206 - -
Acco02g2153 1335 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 1334 - -
Acco02g2153 1335 SUPERFAMILY RING/U-box 389 468 - -
Acco02g2153 1335 MobiDBLite consensus disorder prediction 304 318 - -
Acco02g2153 1335 ProSiteProfiles Trp-Asp (WD) repeats profile. 1301 1335 IPR001680 GO:0005515
Acco02g2153 1335 MobiDBLite consensus disorder prediction 326 346 - -
Acco02g2153 1335 SMART WD40_4 1159 1202 IPR001680 GO:0005515
Acco02g2153 1335 SMART WD40_4 1293 1333 IPR001680 GO:0005515
Acco02g2153 1335 SMART WD40_4 1215 1251 IPR001680 GO:0005515
Acco02g2153 1335 SMART WD40_4 1254 1290 IPR001680 GO:0005515
Acco02g2153 1335 SMART WD40_4 1042 1080 IPR001680 GO:0005515
Acco02g2153 1335 SMART WD40_4 1085 1124 IPR001680 GO:0005515
Acco02g2153 1335 ProSiteProfiles Trp-Asp (WD) repeats profile. 1092 1125 IPR001680 GO:0005515
Acco02g2153 1335 Gene3D - 1163 1335 IPR015943 GO:0005515
Acco02g2153 1335 SMART Ubox_2 394 458 IPR003613 GO:0004842|GO:0016567
Acco02g2153 1335 MobiDBLite consensus disorder prediction 461 497 - -
Acco02g2153 1335 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1092 1125 - -
Acco02g2153 1335 ProSiteProfiles U-box domain profile. 390 465 IPR003613 GO:0004842|GO:0016567
Acco02g2153 1335 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1301 1335 - -
Acco02g2153 1335 SUPERFAMILY WD40 repeat-like 1060 1334 IPR036322 GO:0005515
Acco02g2153 1335 MobiDBLite consensus disorder prediction 304 346 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g2153 Acco-ChrAcco02 18121197 18128052 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g2153 391 497 U-box Gene Family AT1G67530 43.925 5.00e-19 91.3