Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g2148 ATGTCTGTGCCAGAGGAGCAGGACTATGGAGGCTTGACAGAGCTTCCTTCGATGGAAAAAGGCTCAGACAAGTTTTCTCAGAGAAGCAACAGTACTACTGGCTTAAACCTCAAGGCCACTGAGCTACGTCTTGGACTACCTGGGTCCGAGTCACCGGAGAGGGACGTCGCCGGCGCCGGCGCCGGGAAGAGTGCGGTGGTCTGTGGGGCCAAGAGGGGCTTCTCAGACACCATTAATGGCGGTTCTGCAAAGTGGCCTCTGTCAGGAAATGGAGGATCTGAGACAAGTTTGGGTAAAGATAGCATCCCAAACTCACCAAAGCCATTGCTGCATGAGAAGAAGCAGCCCCAGATATCTGCTGTTCCTCCAAAGGAACAAGTTGTGGGGTGGCCACCAATCAGATCTTTCAGGAAGAACTCGATGGCTTCTAATCCTCAAAAGAACGGTGATGATTCAGCAGAAGCCAAGTGTGGATGTCTTTATGTGAAAGTTAGCATGGATGGTGCCCCCTACTTGAGGAAAGTGGATCTCAAAAACTTTGCCAGTTACCGCCAACTTTCTTCAGCACTTGAAAAGATGTTCAGATGTTTTACAATCAGTCAGTGTGGATCTCACGGAATTTCAAGTCATGATAACTTGAGTGAAAGCAGGCTGAAGGATCTGCTTCATGGTTCAGAATATGTGCTTACCTATGAAGACAAGGATGGTGATTGGATGCTAGTTGGAGATGTGCCCTGGGAGATGTTCACTGCCTCTTGCAAGAGATTGAGGATAATGAAGAGTTCTGAGGCAATTGGCCTAGCGCCAAGAGCAATGGAGAAGTGCAAAAGCCGAAACTAG 840 0.4881 MSVPEEQDYGGLTELPSMEKGSDKFSQRSNSTTGLNLKATELRLGLPGSESPERDVAGAGAGKSAVVCGAKRGFSDTINGGSAKWPLSGNGGSETSLGKDSIPNSPKPLLHEKKQPQISAVPPKEQVVGWPPIRSFRKNSMASNPQKNGDDSAEAKCGCLYVKVSMDGAPYLRKVDLKNFASYRQLSSALEKMFRCFTISQCGSHGISSHDNLSESRLKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTASCKRLRIMKSSEAIGLAPRAMEKCKSRN 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g2148 279 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 35 266 IPR003311 GO:0005634|GO:0006355
Acco02g2148 279 MobiDBLite consensus disorder prediction 81 102 - -
Acco02g2148 279 FunFam Auxin-responsive protein 154 271 - -
Acco02g2148 279 Gene3D - 153 273 - -
Acco02g2148 279 ProSiteProfiles PB1 domain profile. 159 261 IPR000270 GO:0005515
Acco02g2148 279 MobiDBLite consensus disorder prediction 20 38 - -
Acco02g2148 279 Pfam AUX/IAA family 40 270 IPR033389 -
Acco02g2148 279 SUPERFAMILY CAD & PB1 domains 159 260 - -
Acco02g2148 279 MobiDBLite consensus disorder prediction 1 62 - -
Acco02g2148 279 MobiDBLite consensus disorder prediction 79 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g2148 Acco-ChrAcco02 18056890 18058883 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g2148 135 277 B3 DNA Binding Superfamily AT1G19850 29.371 5.24e-09 55.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Acco02g2148 AUX_IAA 2.9e-85 CL0072