Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g2135 ATGAGCCAACTAGGTCATCTTCTTCATCTTTCTCTCCTCTTTCTACTTTCCTTCCATGTCACAGCACAACATCAGATGAATGAAAGTTCAACTTCAGTCGATGGCGGCATGGGCAATTTCCAACCAAGTTTAGCAGTTGTCATAGGAATCTTATCTCTCATGTTTTCACTAACATTCGTTCTTCTCTTATATGCCAAGTTCTGTCAACGCAGAGCTTCAGCTCACGTTGACCCGGAGAATCCCCCTTCACTTATGAGATCAAGATCCAGATTCTCTGGAATCGACAAGACTGTCATAGAATCTCTCCCTATCTTTAGATTCTCTTCCCTCAAGGGCTCAAAAGAAGGCCTTGAATGTGCAGTGTGCTTGTCAAAGTTTGAAGATATTGAAATCCTCAGGCTTCTTCCCAAATGCAAACATGCCTTCCACATCGATTGTATCGATCATTGGCTCGAGAGACACTCTAGTTGTCCTCTCTGTAGAAGAAAGGTCAGTTCTGATGACCCCACCATGCTTACTTACTCAAACAGTTTGAGACAGCTAACTATGAACCAGTCAGAGAATGGTGAGGAACCCAATATAGAGATCTTTGTTCAGAGGGAAGAAGATCAAAGTCATGGTGGTTCTTCTTCTTCAAGATTCAGAATTGGAAGCAGCTTTAGGAAATCTGGCAAGGGTATTATTGTTAAAGAAGAAGAATTGCCAATCAAAGAAGAACAAGAAACAGAGCTTGATGGTGGTGGTGGAAAGTTGTATCACAAACAAAACCACAAGATTAATATAAGTGATGTGGTGTTCAAGCACAGATGGAGCAACGTGAGTTCTTCAGACTTGATGTTTTTGAATTCAGAGATGATTAGTTCTGTGCAGAGCAAAAGATTCAATCTTCCAGAACCAAATGGCGATGAGAAGATTCGAGCTTCAACATCAGCAGAGAATGGGCAAATTTTCGACATAAAGGAGGAGATGGAGAGGAAGATATCATTTGAGACAAAGGTCGGTGCATTAAAATCTGTTTTAGATATATCAGATTGTGTTGGAACTTCATCTTCTAGTGGTCATACATCAAAATATGTGAATCCGGGGGAAAAAAGATCGATGTCGGAAATCGCTGGTGTGTCTAGATTTAGAGATTTGGGTATGAGAGACAGAGCATTGAAGGATTCTTCAGTGATTTCAAGTGATGTTAAAGAAGAAAGAAGGAGGCAGCTATGGCTACCAATCGCCAGAAGAACTGTTCAATGGTTTGTGAATAGAGAAAGATCTCAACCATTAAATGTATCGTTTTTTCATCAATAA 1299 0.4034 MSQLGHLLHLSLLFLLSFHVTAQHQMNESSTSVDGGMGNFQPSLAVVIGILSLMFSLTFVLLLYAKFCQRRASAHVDPENPPSLMRSRSRFSGIDKTVIESLPIFRFSSLKGSKEGLECAVCLSKFEDIEILRLLPKCKHAFHIDCIDHWLERHSSCPLCRRKVSSDDPTMLTYSNSLRQLTMNQSENGEEPNIEIFVQREEDQSHGGSSSSRFRIGSSFRKSGKGIIVKEEELPIKEEQETELDGGGGKLYHKQNHKINISDVVFKHRWSNVSSSDLMFLNSEMISSVQSKRFNLPEPNGDEKIRASTSAENGQIFDIKEEMERKISFETKVGALKSVLDISDCVGTSSSSGHTSKYVNPGEKRSMSEIAGVSRFRDLGMRDRALKDSSVISSDVKEERRRQLWLPIARRTVQWFVNRERSQPLNVSFFHQ 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g2135 432 FunFam RING-H2 finger protein ATL43 94 168 - -
Acco02g2135 432 Pfam Ring finger domain 118 161 IPR001841 -
Acco02g2135 432 CDD RING-H2_EL5-like 118 161 - -
Acco02g2135 432 ProSiteProfiles Zinc finger RING-type profile. 119 161 IPR001841 -
Acco02g2135 432 SMART ring_2 119 160 IPR001841 -
Acco02g2135 432 SUPERFAMILY RING/U-box 98 167 - -
Acco02g2135 432 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 20 421 - -
Acco02g2135 432 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 93 169 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g2135 Acco-ChrAcco02 17926844 17928142 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g2135 37 431 C3H Transcription Factor Family AT4G28890 46.462 2.05e-102 310