LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Acco02g2127	ATGGCGGAGCTACCCAGCTCAGAGATGGAGACTAGCATTCATACTAACTGGTCCTCACACTCTCCATCGTCTTCTTCGTCGTCGTCGTCGTCAACGTCTGGGTTATCTAAGTGTTTACCAGCAAACTCTGCTTCTGAGCCATTACCCGCGGAACAGAGGAAGCTGAAGCGAGGCACAGATAGCAGCAGCAGCAAGCACCCTGTGTACAGAGGGGTTCGAATGCGGGCGTGGGGAAAGTGGGTGTCCGAAATCCGGGAGCCCAGGAAGAAGAATCGGATCTGGCTCGGCACGTTTGCCACACCGGAGATGGCGGCGCGTGCCCACGACGTGGCTGCTCTGGCCATCAAAGGCAACTCCGCCATTCTCAACTTCCCCGAACTCGCGGGTTCTCTGCCCCGACCAGCCTCCAACTCGCCCAAAGATGTCCAGGCCGCCGCATCAAAGGCCGCTGCCATGGATGTATTCATCCCTCCCACGGCCTCGTCGCTATATTCTTCCTCCTCATCGTACTCATTGACAATTTCCACCTCCTCCGGCGAGCCATCCACCCCAGAGGAACTCGGCGAGATAGTGGAGCTACCGCCGTTGGGAAGCAGCTTCGAATCACCCGACCCGGTGAACGAATTGGTGTTTTTGGACCCGGTGGACGGGTGGCTGTACCCTCACCCGTGGCACCACAGCATTTATGATGAAAAGGATTGTGGTGGCCATTTCCCTGGAGATGACACATTATTATTAATGCAAGAAGAAGAGAGTATGGCTCTGTGTGGATTCAAGGGCTCCTTGTGGCAATATTAA	798	0.5564	MAELPSSEMETSIHTNWSSHSPSSSSSSSSSTSGLSKCLPANSASEPLPAEQRKLKRGTDSSSSKHPVYRGVRMRAWGKWVSEIREPRKKNRIWLGTFATPEMAARAHDVAALAIKGNSAILNFPELAGSLPRPASNSPKDVQAAASKAAAMDVFIPPTASSLYSSSSSYSLTISTSSGEPSTPEELGEIVELPPLGSSFESPDPVNELVFLDPVDGWLYPHPWHHSIYDEKDCGGHFPGDDTLLLMQEEESMALCGFKGSLWQY	265

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Acco02g2127	265	Pfam	AP2 domain	67	117	IPR001471	GO:0003700\|GO:0006355
	Acco02g2127	265	SMART	rav1_2	68	131	IPR001471	GO:0003700\|GO:0006355
	Acco02g2127	265	SUPERFAMILY	DNA-binding domain	68	126	IPR016177	GO:0003677
	Acco02g2127	265	Gene3D	AP2/ERF domain	68	126	IPR036955	GO:0003700\|GO:0006355
	Acco02g2127	265	PRINTS	Ethylene responsive element binding protein signature	91	107	IPR001471	GO:0003700\|GO:0006355
	Acco02g2127	265	PRINTS	Ethylene responsive element binding protein signature	69	80	IPR001471	GO:0003700\|GO:0006355
	Acco02g2127	265	FunFam	Ethylene-responsive transcription factor 2	67	126	-	-
	Acco02g2127	265	MobiDBLite	consensus disorder prediction	8	40	-	-
	Acco02g2127	265	CDD	AP2	69	127	IPR001471	GO:0003700\|GO:0006355
	Acco02g2127	265	ProSiteProfiles	AP2/ERF domain profile.	68	125	IPR001471	GO:0003700\|GO:0006355
	Acco02g2127	265	PANTHER	ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED	29	198	-	-
	Acco02g2127	265	MobiDBLite	consensus disorder prediction	1	67	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Acco02g2127	Acco-ChrAcco02	17841580	17842377	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Acco02g2127	41	237	AP2-EREBP Transcription Factor Family	AT5G11590	58.537	1.28e-62	195

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Acco02g2127		AP2	5.2e-14	CL0081