Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g2085 ATGAGCAACTTGAGCTCAGTGAACAGTTGTGATCTGATAGATGCCAAGCTTGAAGAGCATCAGTTGTGTGGATCGAAGCAGTGCCCTGGCTGCGGACACAAGTTTGAAACCAAACCGGACTGGTTAGGTCTTCCGGCTGGCGTGAAGTTTGATCCAACGGACCATGAACTAATCGAACACCTCGAAGCCAAAGTGGAGTCCAAGAATATGAAATCTCACCCTTTGATCGATGAGTTCATCCCTACCATTGAAGGAGAAGACGGAATTTGTTATACCCACCCAGAGAAACTCCCAGGAGTAACAAGAGACGGGTTGAGCAGGCACTTTTTTCACAGACCATCGAAGGCATACACGACAGGAACAAGAAAGAGGAGGAAAATACAGAACGAGAGCGAGATGCAAGGCGGAGAAACACGGTGGCACAAGACGGGAAAGACGCGGCCGGTGATGGTGAACGGCAAGCAAAAGGGCTGCAAGAAGATTCTAGTACTCTACACAAATTTCGGCAAGAATCGAAAGCCTGAAAAAACCAACTGGGTCATGCACCAGTACCACCTTGGACAACACGAGGAGGAGAAAGAAGGAGAGCTTGTCGTATCCAAGATATTCTACCAGACACAGCCACGCCAGTGTAACTGGTCCGATCGAAGCACCGCCACCGGCGAACCCAGCGGCGGCGACTTCGTTGTTACTGCCAATAGTAGTAGAAGAGACAGTGCCAGTGGAAGTTGCTCTTCTTCTAAGGACATTAACAACGTTGTTGTTACAGCCCACAGGGACGATCAGATGTCGGCTGTCGTCGGCGTTGTTCCTCCGCCCATGTCATCCTACGTTCATCATCATCATAGCTTGGATATCCAACAACACCTCAAACCCGACCATTTTGGATTCATTCCGTTTAGGAAGAGCTTCGACGAGGTGGGAATAGGAGAGGGTTCAATGGGGAGAGATCAGGTGCAGGCGGCATCAGGAGAAGAAGTTAATGAAGGACAAAGGCAGCAGCAACAACTTCATCAAGTGGCTCAGCATCATAATCAGCATCATCAGAATATGGCAAGCACGGCCTTTCATATAAGTAGGCCTTCACTTCCGATCTCAACCCTAATCTCTCCACCGCCTCTCCACCATACTTCTATCATCCTTGACGATAACTCCTACCATGTCTCCAGAATTATGCTCCAAAATGACAATTTTCAGCAGCAACATCATAAACTAGGAGGGAGCTCTGCGTCTGGTTTGGAGGAACTCATAATGGGATGCACTTCTTCAACTGAAATTAAAGCGGAATCATCTGTCTCCGTTACAAACCCTCAAGAAGCTGAATGGCTCAAATACTCTTACTGGCCCGACCCGGATAACCCGGATCATCACGGAACTATAACTCTCTGCAAACGGAACAAGCTCTGGAAAAACCACACCAGAGAAAAGGAATTGAAGAAAATCAGCAAAGAAGAAGAAAAGGCTAGCCCTACCTTCTGA 1479 0.4807 MSNLSSVNSCDLIDAKLEEHQLCGSKQCPGCGHKFETKPDWLGLPAGVKFDPTDHELIEHLEAKVESKNMKSHPLIDEFIPTIEGEDGICYTHPEKLPGVTRDGLSRHFFHRPSKAYTTGTRKRRKIQNESEMQGGETRWHKTGKTRPVMVNGKQKGCKKILVLYTNFGKNRKPEKTNWVMHQYHLGQHEEEKEGELVVSKIFYQTQPRQCNWSDRSTATGEPSGGDFVVTANSSRRDSASGSCSSSKDINNVVVTAHRDDQMSAVVGVVPPPMSSYVHHHHSLDIQQHLKPDHFGFIPFRKSFDEVGIGEGSMGRDQVQAASGEEVNEGQRQQQQLHQVAQHHNQHHQNMASTAFHISRPSLPISTLISPPPLHHTSIILDDNSYHVSRIMLQNDNFQQQHHKLGGSSASGLEELIMGCTSSTEIKAESSVSVTNPQEAEWLKYSYWPDPDNPDHHGTITLCKRNKLWKNHTREKELKKISKEEEKASPTF 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g2085 492 MobiDBLite consensus disorder prediction 126 145 - -
Acco02g2085 492 SUPERFAMILY NAC domain 39 205 IPR036093 GO:0003677|GO:0006355
Acco02g2085 492 ProSiteProfiles NAC domain profile. 44 205 IPR003441 GO:0003677|GO:0006355
Acco02g2085 492 MobiDBLite consensus disorder prediction 212 247 - -
Acco02g2085 492 Pfam No apical meristem (NAM) protein 45 186 IPR003441 GO:0003677|GO:0006355
Acco02g2085 492 Gene3D NAC domain 53 209 IPR036093 GO:0003677|GO:0006355
Acco02g2085 492 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 8 342 IPR044799 GO:0003700
Acco02g2085 492 MobiDBLite consensus disorder prediction 126 144 - -
Acco02g2085 492 FunFam NAC domain-containing protein 73 53 209 - -
Acco02g2085 492 MobiDBLite consensus disorder prediction 227 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g2085 Acco-ChrAcco02 17362542 17366960 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g2085 10 455 NAC Transcription Factor Family AT5G56620 52.677 1.10e-138 404
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Acco02g2085 NAM 5.4e-24 No_clan