Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g2075 ATGCTTCCATCACCATCCAATCAATTGTCCTCCTCTATGATGCTCGGAGAACCCCATCGCTCTAATCCGACGGTTCACATACCGCCATGGCCGGTCATCGATGATCCGATGCCGGAGGTGTACTCTCCTTACTCAATGAGTGGCATGTCTGCTAATTCCGACGGCAATGCTAGCGGCGGTGATTACTCCCCGTACTACTTGCAAGAAGCCCTGACGGCACTCCAGCGTTATCTGCCGTCGTCCGACGCCGATATCGACTCCGACTCCGAGGTTCTTGGTCGAGAGTTGGACGCTGCCGTGGATGCCTACTCCTGCGACCATTTCCGAATGTTCGAGTTCAAGGTGAGGAGGTGCGCGCGCGGTCGGTCACATGACTGGACTGAGTGTCCTTATGCTCATCCGGGCGAGAAGGCTCGCCGTAGGGATCCGAGGAAGTATCACTATTCGGGTACTGCATGCCCTGATTTCCGCAAAGGGAATTGTAAGAAGGGAGATGCATGTGAGTTTGCTCATGGCGTGTTTGAGTGTTGGCTTCATCCAGCCCGTTATCGTACACAGCCATGCAAGGACGGCACCGGCTGCCGCCGAAGGGTCTGTTTTTTTGCTCACACGCCGGAGCAACTCAGGGTCCTTCCTCAGCAGAGTCCGAGGAGTGCTAACTCGGTGGACTCCTATGATGGGTCTCCTCTCAGGCAAGCGATTGACTCTTCTTGCGCAAAAGCGCTTCCATTCATGTCTTCTCCAGGTTCTATTTCCCCTCCTGCAACTCCTCCAACTCCTCCGCCAGAATCTCCTCCTATGTCGCCGATGGCACAGTCTCTGAGCCGCTCTCTGGGTTCGAGCTCCATCAATGAGATGGTGGCTTCTCTGCGTAATTTACAGCTGGGAAAGGTAAAGTCTCTACCTCCTTCTAGAAATGTTCCAATGGGATCTCCCCGTTTTGGATCTCCACGGGGATCGGTGCTCCGTCCAGATTTCTGTAGCCTTCCGTCAACTCCTACTGAGGCACCGACTCGTTCTGGTGCCAGTTATTTTGATCTCTGGGATCAGATTTGTGAGGAGGAGCCTGCCATGGAGAGGGTGGAATCTGGAAGGGACATAAGGGCGAAGATGTTTGAAAAACTAAGCAAAGAGAATTCTCTGAATCGATCGGGTCCCAGCACATCCGCCGGAGCTCCGGATGTTGGTTGGGTTTCAGAGCTGGTTTAG 1209 0.5401 MLPSPSNQLSSSMMLGEPHRSNPTVHIPPWPVIDDPMPEVYSPYSMSGMSANSDGNASGGDYSPYYLQEALTALQRYLPSSDADIDSDSEVLGRELDAAVDAYSCDHFRMFEFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPDFRKGNCKKGDACEFAHGVFECWLHPARYRTQPCKDGTGCRRRVCFFAHTPEQLRVLPQQSPRSANSVDSYDGSPLRQAIDSSCAKALPFMSSPGSISPPATPPTPPPESPPMSPMAQSLSRSLGSSSINEMVASLRNLQLGKVKSLPPSRNVPMGSPRFGSPRGSVLRPDFCSLPSTPTEAPTRSGASYFDLWDQICEEEPAMERVESGRDIRAKMFEKLSKENSLNRSGPSTSAGAPDVGWVSELV 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g2075 402 Gene3D - 147 211 - -
Acco02g2075 402 MobiDBLite consensus disorder prediction 1 21 - -
Acco02g2075 402 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 152 172 IPR000571 GO:0046872
Acco02g2075 402 PANTHER UNKEMPT FAMILY MEMBER 63 402 IPR045234 -
Acco02g2075 402 MobiDBLite consensus disorder prediction 377 402 - -
Acco02g2075 402 MobiDBLite consensus disorder prediction 299 320 - -
Acco02g2075 402 ProSiteProfiles Zinc finger C3H1-type profile. 148 174 IPR000571 GO:0046872
Acco02g2075 402 MobiDBLite consensus disorder prediction 250 268 - -
Acco02g2075 402 MobiDBLite consensus disorder prediction 1 18 - -
Acco02g2075 402 FunFam Zinc finger CCCH domain-containing protein 66 105 173 - -
Acco02g2075 402 SMART c3hfinal6 182 205 IPR000571 GO:0046872
Acco02g2075 402 SMART c3hfinal6 147 173 IPR000571 GO:0046872
Acco02g2075 402 MobiDBLite consensus disorder prediction 246 279 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g2075 Acco-ChrAcco02 17256543 17258003 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g2075 97 308 C2H2 Transcription Factor Family AT5G12850 49.533 2.45e-58 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Acco02g2075 zf-CCCH 4e-06 CL0537