Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g2053 ATGGACTTAACCTCCGCCGTAATCAACAACATCGCCGCCTCTAATACTCCCAGCGCTAAATCTCCTGAACATGACACTGAAATTCCGACTCGGATCCAACCCGTCCCCGCTAAGCCCTTGTCCTCCAACGGCGTCCTGAAGCGCCATCAGCCCCACCACAAACATCTTGTGCCGTTTACCTACAAAGAGTGCTTGAAGAACCATGCAGCCAGCTTGGGAGGCCACGCGCTCGACGGTTGCGGCGAGTTCATGCCTTCTCCCAACGCCAATTCCGCCGACCCCAGCTCCATCAAATGCGCCGCCTGTGGCTGCCACCGTAATTTCCATCGCCGTGAGCCCGAGGAGCCTATTTCCACCGCGACCCACGTCATCGAGTTTCAGCCCCACCATCGGCACCACCCTCCACCGCCTCCGCCGTTCCAAGCTCCGAATCGGAGCCCCAATTCAGCTTCCCCGCCCCCGATCTCATCTTCCTTCTACCCCTCCGCGCCCCACATGCTCCTGGCTCTCTCTGCCGGTTTGTCGGTCCATCCCGAGAGCACGGCTGCTCCGGCGAATGCTTTGGGGACGCCGACTATGAATTCTAGGAAGCGATTCAGGACTAAGTTCACACAAGAGCAGAAGGATAAAATGCACCAGTTCGCCGAGAGAGTTGGGTGGAAGATGCAGAAGAGAGACGATGATTTGGTGCAAGAGTTCTGTCACGAGGTTGGGGTTGATAGAAGTGTGTTGAAGGTTTGGATGCACAATAATAAGAACACTTTTGTGAAGAAAGATGCGATGAATGGGAATAGAAGCGTTCTTGAGCTAGATCCAAACGACAATCACGACAATGAAATCATCGGCAACATCAACGGCAGCGCCCAGGACCCGAATCATCATTACCAGAACGATAGTGGGGCGAACGCCGGTACTAATGGGTCGTCTTCGTCGTCATAA 939 0.5485 MDLTSAVINNIAASNTPSAKSPEHDTEIPTRIQPVPAKPLSSNGVLKRHQPHHKHLVPFTYKECLKNHAASLGGHALDGCGEFMPSPNANSADPSSIKCAACGCHRNFHRREPEEPISTATHVIEFQPHHRHHPPPPPPFQAPNRSPNSASPPPISSSFYPSAPHMLLALSAGLSVHPESTAAPANALGTPTMNSRKRFRTKFTQEQKDKMHQFAERVGWKMQKRDDDLVQEFCHEVGVDRSVLKVWMHNNKNTFVKKDAMNGNRSVLELDPNDNHDNEIIGNINGSAQDPNHHYQNDSGANAGTNGSSSSS 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g2053 312 MobiDBLite consensus disorder prediction 1 37 - -
Acco02g2053 312 MobiDBLite consensus disorder prediction 128 158 - -
Acco02g2053 312 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 60 112 IPR006456 -
Acco02g2053 312 SUPERFAMILY Homeodomain-like 190 255 IPR009057 -
Acco02g2053 312 Gene3D - 186 256 - -
Acco02g2053 312 MobiDBLite consensus disorder prediction 272 312 - -
Acco02g2053 312 MobiDBLite consensus disorder prediction 278 312 - -
Acco02g2053 312 FunFam Zinc-finger homeodomain protein 2 184 257 - -
Acco02g2053 312 MobiDBLite consensus disorder prediction 133 150 - -
Acco02g2053 312 Pfam ZF-HD protein dimerisation region 60 113 IPR006456 -
Acco02g2053 312 MobiDBLite consensus disorder prediction 1 23 - -
Acco02g2053 312 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 48 254 - -
Acco02g2053 312 NCBIfam homeobox domain, ZF-HD class 196 253 IPR006455 -
Acco02g2053 312 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 61 112 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g2053 Acco-ChrAcco02 16981881 16982819 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g2053 20 290 ZF-HD Transcription Factor Family AT3G28920 53.333 1.61e-73 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Acco02g2053 ZF-HD_dimer 2.5e-28 No_clan