Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g2050 ATGGGGAGACCGCCCTGTTGTGATAAGGAAGGGGTCAAGAAAGGACCTTGGACTCCCGAAGAAGACATCGTTTTGGTCTCTTATATCCAGGAACATGGTCCTGGCAATTGGAGGGCTGTACCCACTAATACAGGGCTGGCACGATGCAGTAAGAGTTGTAGACTTAGATGGACAAATTACCTAAAGCCAGGAATTAAACGTGGCAAGTTCACAGACCAAGAGGAGAAGATGATAATCCATCTTCAAGACCTTCTGGGCAACAGATGGGCAGCCATAGCCTCGTACCTTCCACAGAGAACTGACAATGACATAAAGAACTATTGGAACACCCATTTGAAGAAGAAGCTCGAGAAATTGCAACCTACACCATCATCATCAGCCTCACAATCAATGCCCAGAGGCCAGTGGGAAAGAAGGCTTCAAACAGACATCCACATGGCCAAGAGAGCTCTTAGCCAGGCTCTATCTCCAGATCAGACCACACCTTCTTCTTACTTATCAGAACCATCAAACCCCTCAAAGCCAACAACCCAGTCCTTAAGCTATGCCTGTAATGCAGATAACATAGCTCGTTTGTTAAAAGGATGGATGAAAAATCCACCAAAGGCCTCCACGACAACAAGCTCAGCAATCACTCAAAGTTCTATAAATAACCTAGCTGCTTCTGCTTCAGCTTCAGCTTCAGGAAACGATACTTCTTCTAGCGAAGGAATTACCACCACAAGTGTTAAATTCTCTGACACTAGTTTTGTCTCTTTGTTGGGGTTAGAGTCTTTGGATTATTGCTCTTCGAATTCTGATTTTTCTACGGAGGCCACTACTACTCTCGAAAGCAAGCTGGATTGTACAGGGGCCGATGACGAAATGCCCTTATATGTGCTTGAGAAGTGGCTTCTCGACGACGCTGCTACGATCACATCGCTTGAAGATGAAGGCGCCCTTTTTTTCTAG 951 0.4564 MGRPPCCDKEGVKKGPWTPEEDIVLVSYIQEHGPGNWRAVPTNTGLARCSKSCRLRWTNYLKPGIKRGKFTDQEEKMIIHLQDLLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLEKLQPTPSSSASQSMPRGQWERRLQTDIHMAKRALSQALSPDQTTPSSYLSEPSNPSKPTTQSLSYACNADNIARLLKGWMKNPPKASTTTSSAITQSSINNLAASASASASGNDTSSSEGITTTSVKFSDTSFVSLLGLESLDYCSSNSDFSTEATTTLESKLDCTGADDEMPLYVLEKWLLDDAATITSLEDEGALFF 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g2050 316 CDD SANT 69 112 IPR001005 -
Acco02g2050 316 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Acco02g2050 316 CDD SANT 16 61 IPR001005 -
Acco02g2050 316 MobiDBLite consensus disorder prediction 152 180 - -
Acco02g2050 316 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 222 - -
Acco02g2050 316 Gene3D - 68 141 - -
Acco02g2050 316 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Acco02g2050 316 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Acco02g2050 316 MobiDBLite consensus disorder prediction 153 180 - -
Acco02g2050 316 FunFam MYB-related transcription factor 13 66 - -
Acco02g2050 316 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Acco02g2050 316 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Acco02g2050 316 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Acco02g2050 316 SMART sant 66 114 IPR001005 -
Acco02g2050 316 SMART sant 13 63 IPR001005 -
Acco02g2050 316 Gene3D - 13 66 - -
Acco02g2050 316 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g2050 Acco-ChrAcco02 16949406 16950562 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g2050 1 303 MYB Transcription Factor Family AT5G62470 47.025 1.26e-98 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Acco02g2050 Myb_DNA-binding 2.7e-14 CL0123