Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g2048 ATGGATGGGAGGAATGAGATGGAGAAGATGAACGATGATACCATATTGCCAGGTTTTAGGTTTCACCCCACGGACGAGGAGCTTGTTGATTTTTACCTCAGAAGAATGATTCAGCAGAAATCTCTCCCTATTGAGCTCATCAAGAAAGTAGATATCTACAAATACGATCCTTGGGATCTTCCAAAGCTGGCGAGAACTGGGGAGAAAGAGTGGTATTTCTACTGTCCAAGGGATAGAAAATACAGGAACAGTCCACGACCAAATAGAGTGACAAGAGCTGGGTTTTGGAAAGCCACGGGAACAGACAGGCCTATATACTCATCATCAGAAGGCAAGTGCATAGGCTTGAAGAAATCTCTTGTGTTCTACAGAGGCCGAGCCGCCAAAGGCATCAAAACTGATTGGATGATGCATGAATTTCGCCTCCCTTCTCCGCCGCCGCCAGATTCATCGCCGTCGTCCAAGAAGCCCTTTGACAACAACAAAACCCACTCTACTCGACAGGATTCATGGGCGATTTGTAGGATATTCAAGAAAACAAACTCCATGTCCATGACACAGAAAGCTCTATCTCATACTTGGATGGCTCATCAGTTTCCGGCGGAGAGCATATCGGTGTCTGATATGCTCGCTCACAGTGCAAGCCGTAATAATTATCACTTGAGTTCGGAGAACATGTCTTTCACCACAGAATTATACGAGCAGGTGTCAAGTGGTAATTTCTCTGGTTCAGATCATGTTGGCTTCGATAAGTCCTCCTCCCAGATGCCTGTCGTCTCCGACGGTGGCGTGGTAGTAGCAGACACCTTCATGTTCTCTACTTTCGAATCATCAGGCCCTTGTGCCTATATAGGCTTTGAAGGGCCAAACAATAATATGATTAATAATGGCGTCTCGGTGGTGACTTTACCTCATCATCATGAAGACGTACAAGCATTAAACATGGCCGCATCTACAGTAGCAGAAGCTATTGGGTTTCCTTTCAGTTTGCCTCCACCAGTTTCAAACGATGCTTGGAAGCCTAATCTCCTATGGGAATCATCACAACCTTGTCCTAGCGACATGTCTACAAATAATAGATGCAGCACTTGA 1092 0.456 MDGRNEMEKMNDDTILPGFRFHPTDEELVDFYLRRMIQQKSLPIELIKKVDIYKYDPWDLPKLARTGEKEWYFYCPRDRKYRNSPRPNRVTRAGFWKATGTDRPIYSSSEGKCIGLKKSLVFYRGRAAKGIKTDWMMHEFRLPSPPPPDSSPSSKKPFDNNKTHSTRQDSWAICRIFKKTNSMSMTQKALSHTWMAHQFPAESISVSDMLAHSASRNNYHLSSENMSFTTELYEQVSSGNFSGSDHVGFDKSSSQMPVVSDGGVVVADTFMFSTFESSGPCAYIGFEGPNNNMINNGVSVVTLPHHHEDVQALNMAASTVAEAIGFPFSLPPPVSNDAWKPNLLWESSQPCPSDMSTNNRCST 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g2048 363 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 12 224 - -
Acco02g2048 363 MobiDBLite consensus disorder prediction 139 166 - -
Acco02g2048 363 Gene3D NAC domain 24 184 IPR036093 GO:0003677|GO:0006355
Acco02g2048 363 FunFam NAC domain-containing protein 35 24 182 - -
Acco02g2048 363 ProSiteProfiles NAC domain profile. 15 179 IPR003441 GO:0003677|GO:0006355
Acco02g2048 363 SUPERFAMILY NAC domain 10 179 IPR036093 GO:0003677|GO:0006355
Acco02g2048 363 Pfam No apical meristem (NAM) protein 17 142 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g2048 Acco-ChrAcco02 16929778 16930963 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g2048 5 219 NAC Transcription Factor Family AT5G39820 61.538 3.71e-98 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Acco02g2048 NAM 4.9e-37 No_clan