Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g2042 ATGTCTAGCAGAAGATCAAGGCAACAATCGTCATCAGGTTCTTCATCATCCATCTCCGATGACCAAATCATCCAACTTGTTTCCAAGTTGCGTCAACTTGTTCCTGAGATTCGTGATACTCGCCGTTCCAACAAGGCATCTGCATCAAAGGTCCTACAAGAGACGTGCAATTACATCAGAAGTTTAAACAAAGAAGTGGACGACTTGAGCCAGCGACTCTCTCAGTTGTTGACCACAATCGATGCTGATAGTGCCGAGGCCGCCATCATTAGGAGCCTCATTAATCCTTAA 291 0.4536 MSSRRSRQQSSSGSSSSISDDQIIQLVSKLRQLVPEIRDTRRSNKASASKVLQETCNYIRSLNKEVDDLSQRLSQLLTTIDADSAEAAIIRSLINP 96
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g2042 96 Gene3D - 20 91 IPR036638 GO:0046983
Acco02g2042 96 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 26 81 IPR036638 GO:0046983
Acco02g2042 96 Coils Coil 52 79 - -
Acco02g2042 96 MobiDBLite consensus disorder prediction 1 20 - -
Acco02g2042 96 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 7 62 IPR011598 GO:0046983
Acco02g2042 96 Pfam Helix-loop-helix DNA-binding domain 23 62 IPR011598 GO:0046983
Acco02g2042 96 PANTHER TRANSCRIPTION FACTOR PRE 1 94 IPR044293 GO:0006355|GO:0040008|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g2042 Acco-ChrAcco02 16839140 16840293 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g2042 18 94 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G39860 74.026 6.71e-36 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Acco02g2042 HLH 7.8e-05 No_clan