Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g2028 ATGGAGACGGCCGTGATGCTTAAAAGTAAAGTGAGCAAAAGGAGCCAACTCACGGCAGAAGATCAGTTGCAAGGAACTCGTTGTGTCAAGAGACGGCGAAGAGAGCCTTGTGCGGTTGTACTTAATAACAATGATGCTCCAAGTGATCAGGTGCAACAGCAGCTGAAACCACAGCTACAGGGTGATCAAAATTTAAGTACGAGCACGATGAAAAGAAGCTCAAGATTTCGTGGTGTAAGCAGGCATCGCTGGACTGGTCGATTTGAAGCTCACCTGTGGGACAAGCTCTCTTGGAATGTAACACAGAAGAAGAAAGGGAAGCAAGGGGCTTACGATGAAGAAGAATCAGCAGCAAGAGCTTATGATTTAGCTGCACTTAAATACTGGGGAACATCTACTTTCACTAATTTTCCGATATCAGATTATCAGCAAGAGATAGAGATGATGGAGACCATGACCAAAGAGGAGTACTTGGCTACTTTAAGAAGAAAGAGCAGTGGCTTCTCAAGAGGCGTATCTAAGTACAGAGGCGTTGCAAGGCACCACCATAACGGTAGATGGGAAGCAAGGATAGGGAGAGTGTTTGGAAACAAATACCTCTATCTTGGCACTTATAGCACCCAAGAGGAAGCCGCTCGTGCTTATGACATAGCAGCCATTGAGTACAGAGGGATCCATGCTATGACAAACTTTGATTTGAGTACTTACATAAGATGGTTGAAACCTACAAGAGAAAACATCCAAGAAGCAATACCTGAATCACAGGTGGTACCGGAGGCTCAAGCAGAGACATCCGCATCTATATACATTCCAAAAGAGGAGAACCAATCCTTGACCCTTCACAGTAATTCTTTCACAGCTTACCTGAACTCTCCTTGTACGCAAGATTTACATGAAAGCAAAGCCCCTTTAATGTCGAGCAACAACAATAAGGCATCTTCTCCTACTGCCCTTGGCCTTCTCTTTCGATCTTCGATATTCAGAGAACTAGTCAAAAAGAACCCAAACATATCTGGAGATGAAACTGATGGAGAAGACTCAAGGTCAAGGGATTTACAGCAACTTACGGGTGATGCTGAGCTAGGTGGGATCTTCTACGATGTAATTGGCAATGATCTCCCGTTTGTCGGCGATCCCGGCAGGTACAACTCAGGATTGCAAGAAAGAGACTTCCAGTCCCTTCTATGA 1188 0.4478 METAVMLKSKVSKRSQLTAEDQLQGTRCVKRRRREPCAVVLNNNDAPSDQVQQQLKPQLQGDQNLSTSTMKRSSRFRGVSRHRWTGRFEAHLWDKLSWNVTQKKKGKQGAYDEEESAARAYDLAALKYWGTSTFTNFPISDYQQEIEMMETMTKEEYLATLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYRGIHAMTNFDLSTYIRWLKPTRENIQEAIPESQVVPEAQAETSASIYIPKEENQSLTLHSNSFTAYLNSPCTQDLHESKAPLMSSNNNKASSPTALGLLFRSSIFRELVKKNPNISGDETDGEDSRSRDLQQLTGDAELGGIFYDVIGNDLPFVGDPGRYNSGLQERDFQSLL 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g2028 395 SUPERFAMILY DNA-binding domain 74 140 IPR016177 GO:0003677
Acco02g2028 395 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 48 300 - -
Acco02g2028 395 MobiDBLite consensus disorder prediction 43 78 - -
Acco02g2028 395 ProSiteProfiles AP2/ERF domain profile. 75 138 IPR001471 GO:0003700|GO:0006355
Acco02g2028 395 CDD AP2 173 234 IPR001471 GO:0003700|GO:0006355
Acco02g2028 395 PRINTS Ethylene responsive element binding protein signature 214 234 IPR001471 GO:0003700|GO:0006355
Acco02g2028 395 PRINTS Ethylene responsive element binding protein signature 76 87 IPR001471 GO:0003700|GO:0006355
Acco02g2028 395 SUPERFAMILY DNA-binding domain 173 234 IPR016177 GO:0003677
Acco02g2028 395 CDD AP2 74 140 IPR001471 GO:0003700|GO:0006355
Acco02g2028 395 MobiDBLite consensus disorder prediction 43 74 - -
Acco02g2028 395 ProSiteProfiles AP2/ERF domain profile. 174 232 IPR001471 GO:0003700|GO:0006355
Acco02g2028 395 Pfam AP2 domain 74 130 IPR001471 GO:0003700|GO:0006355
Acco02g2028 395 Pfam AP2 domain 173 224 IPR001471 GO:0003700|GO:0006355
Acco02g2028 395 Gene3D AP2/ERF domain 173 234 IPR036955 GO:0003700|GO:0006355
Acco02g2028 395 Gene3D AP2/ERF domain 74 140 IPR036955 GO:0003700|GO:0006355
Acco02g2028 395 SMART rav1_2 174 238 IPR001471 GO:0003700|GO:0006355
Acco02g2028 395 SMART rav1_2 75 144 IPR001471 GO:0003700|GO:0006355
Acco02g2028 395 FunFam AP2-like ethylene-responsive transcription factor 173 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g2028 Acco-ChrAcco02 16626416 16628399 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g2028 71 285 AP2-EREBP Transcription Factor Family AT5G57390 55.656 3.67e-79 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Acco02g2028 AP2 2e-09 CL0081