Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g2027 ATGGCTGAAGGTTTTAATAAGGCTGCCACCCTTTTGTTCTTCTTGGCCATTTTCTCCATTGCTGTCCCATGCCTCCAAGCCAACGAGGCCGAGTACGACGAGTACACCATTAAACGATCCGAGGAAGCCCGTAGAGCCGCCCTTGAAGCCTACGAGCCTGACCCCTATAATGTCACCTCCGAATTCAATCTCCACGTTCACTTGTACGTCTGTGTGTGTACAATCATATATGTAGCTTTGAATGAGAGCAACAGGAGGGGACTACGTGTGAGGAAATACAGAGGACCATGCATGGCCACCAACCCTATTGACAGGTGCTGGAGGTGCAGGCCTGATTGGGCCAATGATCGCATGAGATTGGCTAGATGTGTGAAGGGTTTTGGCCGGAAGACCACCGGAGGACTAGGCGGCCGGATATATGTGGTCACCGACCCCTCTGACAACGACCTGCAGAACCCCAAGCCTGGGACTCTGAGGTACGGGGTGGTCCAGGACGAGCCATTGTGGATCATTTTCCAACGCGACATGAACATTGTACTTCAACAGGAACTCCTGGTTAACTCGCACAAGACCATCGACGGCCGTGGCGCCAACGTCCAGATCACCAAAGGTGCTAGCCTTTCCTTGTTCATGGTCACCAACGTTATCGTCCACAACATTCGCATCCACAACGTCGTGTCCAAGCCAGGTGGTATGATTAGGGACTCCGCTCACCACGTCGGTTTGAGAACCAGGAGCGACGGAGACGCCATCTCCATTTTTGGCGCTTCCAACATCTGGATCGATCATGTTTCAATGTCTAGAGCCGCCGATGGGCTCATTGACGCTATCCAAGGCTCCACCGCCATCACCATCTCCAACTGCCACATGACCAATCACGACCACGTGATGCTGCTGGGAGCAAGTGATGTATACACAGGCGACAAGAGAATGCAGGTGACGGTGGCGTTCAACCATTTCGGGCAGGGACTGATACAGAGGATGCCAAGGGCAAGATGGGGATTTGTGCACGTAGTGAACAACGACTATACACACTGGCTCATGTACGCCATAGGTGGAAGCTCAGCGCCGACAATACTGAGTCAGGGAAACCGATTCATTGCTCCGCACGAGCGGGCGGCGAAGGAGATAACGCACAGGGAGTACGCACCGGCGCAGGAATGGAGCAGGTGGAAGTGGACGTCGGAGATGGACTTGTTCATGAACGGAGCGACGTTTCTTCAGTCGGGAGGGCACGTAATGGCCAAGTCATACCCAAGACAATTAATGATCAAACCAAGAGGTGGATCCTCTGTGACAAGGTTGACCAGGTTTACTGGTGCTCTTGGTTGCCGAGTGGGAAAACCTTGTTAG 1353 0.5322 MAEGFNKAATLLFFLAIFSIAVPCLQANEAEYDEYTIKRSEEARRAALEAYEPDPYNVTSEFNLHVHLYVCVCTIIYVALNESNRRGLRVRKYRGPCMATNPIDRCWRCRPDWANDRMRLARCVKGFGRKTTGGLGGRIYVVTDPSDNDLQNPKPGTLRYGVVQDEPLWIIFQRDMNIVLQQELLVNSHKTIDGRGANVQITKGASLSLFMVTNVIVHNIRIHNVVSKPGGMIRDSAHHVGLRTRSDGDAISIFGASNIWIDHVSMSRAADGLIDAIQGSTAITISNCHMTNHDHVMLLGASDVYTGDKRMQVTVAFNHFGQGLIQRMPRARWGFVHVVNNDYTHWLMYAIGGSSAPTILSQGNRFIAPHERAAKEITHREYAPAQEWSRWKWTSEMDLFMNGATFLQSGGHVMAKSYPRQLMIKPRGGSSVTRLTRFTGALGCRVGKPC 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g2027 450 Gene3D - 100 443 IPR012334 -
Acco02g2027 450 Pfam Pectate lyase, N terminus 30 68 IPR007524 GO:0030570
Acco02g2027 450 SMART amb_all 175 372 IPR002022 -
Acco02g2027 450 PRINTS Pollen allergen Amb family signature 327 346 IPR018082 -
Acco02g2027 450 PRINTS Pollen allergen Amb family signature 247 268 IPR018082 -
Acco02g2027 450 PRINTS Pollen allergen Amb family signature 391 415 IPR018082 -
Acco02g2027 450 PRINTS Pollen allergen Amb family signature 147 172 IPR018082 -
Acco02g2027 450 PRINTS Pollen allergen Amb family signature 183 199 IPR018082 -
Acco02g2027 450 PRINTS Pollen allergen Amb family signature 123 140 IPR018082 -
Acco02g2027 450 PRINTS Pollen allergen Amb family signature 421 444 IPR018082 -
Acco02g2027 450 PRINTS Pollen allergen Amb family signature 349 368 IPR018082 -
Acco02g2027 450 SUPERFAMILY Pectin lyase-like 101 441 IPR011050 -
Acco02g2027 450 Pfam Pectate lyase 183 366 IPR002022 -
Acco02g2027 450 PANTHER PECTATE LYASE 18-RELATED 43 448 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g2027 Acco-ChrAcco02 16621146 16622801 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g2027 12 450 Polysaccharide Lyase AT5G15110 54.310 0.0 525