Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g2008 ATGGACAAGCCCCCACCGGAAAATGCTGACCACAGCGACGACGCTGAATCCGCCATTGCCAGTAGTAGTAGCCTCCGGGACCTCAATGTTAGTGGCAGTGCTAGTGTTAGTCTGTGTAGTAGTAGCAGCAACATTGAGACTCAGAGGAGCACTGGATCTATGACGGATTATGAGGCCAGTGAGGGAAGTTTTAGGAGTTTTAGCCCTTCGAAGCCTCACAAGGGGAACGATATTAGGTGGGATGCGATACAATGTGTGAAGGGGAAGGATGGGGAATTGGGTTTGGGGCATTTTAGGCTGTTGAAGAAACTGGGTTTTGGGGATATTGGGAGTGTGTATTTAGCTGAGCTTAGAGGGATGGGTTGTTTGTTTGCGATGAAGGTTATGGATAAGGGCATGTTGGCTGGTAGGAAGAAATTGGCTAGAGCTCAGACTGAGAGGGATATTTTGAGTTTATTGGACCATCCTTTTCTTCCTTCCCTTTATTCACATTTTGAGACTGAGAAGTTCTCTTGCTTGCTCATGGAGTTTTGCAGTGGTGGGGATCTTCATACCCTCCGCCAAAGACAGCAAGGCAAGCATTTCACAGAGCAAGCTGCCAGGTTTTACGCTTCAGAAGTGCTTCTTGCTCTGGAGTATCTACACATGATGGGAGTGGTGTACAGAGATTTGAAGCCAGAAAACGTACTGGTAAGAGAAGATGGGCATATCATGCTCTCTGATTTTGACTTGTCACTGAGATGCTGTGTAAGTCCCACCCTTGTTCAGTCCAGTAAAGAACCTTCTTGTCAGATATCCTCCTACTGCATCCAGCCATCTTCATGCATCGATCCACCCTGCAAATTACCCGTTTGCGTCGAGCCTTCTTGCCTTCAGCCTTCTTGCTTCAAACCCCATTTCTTCACCTCCAAAAATACCAAACCAAAGAGTGAAAAACACAGCTCAGCCAATTCTGACTCATTCCCTGTACTAATTGCTGAACCAACCAATGCTCGCTCCATGTCATTTGTTGGGACTCATGAATATCTAGCTCCTGAGATTATAAGAGGTGATGGTCATGGAAGTGCAGTGGATTGGTGGACTTTTGGTATTTTTCTTTATGAATTGTTGTTTGGGAAGACCCCATTTAAAGGCAATGGGAACAGAGAAACTTTGTTCAATGTTGTGGGTCAGAATCTAAAGTTCCCTGAGGGATCAAGCATCAATTTTGCAGCGAAGGATTTGATAAGAGGATTGCTTGTGAAAGATCCACAGAAGAGGCTTGGATTCAAAAGAGGAGCCACAGAGATTAAACAACATCATTTCTTTGATGGTATTAATTGGGCTCTCATTCGCAGCATTCATCCCCCCGAGATCCCAAAACCACTTGATCTTTCTTTTATGAATCAGACATCCTCCAAGTCACCTTCAGTGCCTCCTTGTGAAAAAGGTGCTGCTACAACTGATTCAGACAGGTCCTCTTCGGGTCCATACTTAGATTTTGAATTCTTTTAG 1494 0.4505 MDKPPPENADHSDDAESAIASSSSLRDLNVSGSASVSLCSSSSNIETQRSTGSMTDYEASEGSFRSFSPSKPHKGNDIRWDAIQCVKGKDGELGLGHFRLLKKLGFGDIGSVYLAELRGMGCLFAMKVMDKGMLAGRKKLARAQTERDILSLLDHPFLPSLYSHFETEKFSCLLMEFCSGGDLHTLRQRQQGKHFTEQAARFYASEVLLALEYLHMMGVVYRDLKPENVLVREDGHIMLSDFDLSLRCCVSPTLVQSSKEPSCQISSYCIQPSSCIDPPCKLPVCVEPSCLQPSCFKPHFFTSKNTKPKSEKHSSANSDSFPVLIAEPTNARSMSFVGTHEYLAPEIIRGDGHGSAVDWWTFGIFLYELLFGKTPFKGNGNRETLFNVVGQNLKFPEGSSINFAAKDLIRGLLVKDPQKRLGFKRGATEIKQHHFFDGINWALIRSIHPPEIPKPLDLSFMNQTSSKSPSVPPCEKGAATTDSDRSSSGPYLDFEFF 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g2008 497 ProSitePatterns Serine/Threonine protein kinases active-site signature. 219 231 IPR008271 GO:0004672|GO:0006468
Acco02g2008 497 FunFam serine/threonine-protein kinase D6PK-like 331 454 - -
Acco02g2008 497 FunFam serine/threonine-protein kinase D6PK-like 182 249 - -
Acco02g2008 497 Gene3D Transferase(Phosphotransferase) domain 1 331 454 - -
Acco02g2008 497 SUPERFAMILY Protein kinase-like (PK-like) 73 466 IPR011009 -
Acco02g2008 497 SMART serkin_6 98 436 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco02g2008 497 ProSiteProfiles Protein kinase domain profile. 98 436 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco02g2008 497 MobiDBLite consensus disorder prediction 463 492 - -
Acco02g2008 497 MobiDBLite consensus disorder prediction 1 74 - -
Acco02g2008 497 PANTHER FLIPPASE KINASE 1-RELATED 35 458 - -
Acco02g2008 497 FunFam Serine/threonine-protein kinase D6PK-like 96 181 - -
Acco02g2008 497 CDD STKc_phototropin_like 97 457 - -
Acco02g2008 497 Pfam Protein kinase domain 99 247 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco02g2008 497 Pfam Protein kinase domain 333 436 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco02g2008 497 MobiDBLite consensus disorder prediction 15 70 - -
Acco02g2008 497 Gene3D Phosphorylase Kinase; domain 1 97 177 - -
Acco02g2008 497 Gene3D Transferase(Phosphotransferase) domain 1 178 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g2008 Acco-ChrAcco02 16207619 16209677 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g2008 8 497 AGC Kinase Gene Family AT5G40030 73.022 0.0 698
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Acco02g2008 Pkinase 6.4e-37 CL0016