Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g2007 ATGGATTCTAGATTTGTTCTTGCAATTTTGTTCTGTTTTCTCTGTTTCCTCCCTCATCTATCTGTTTCTTCCATTAGATCGCTGGGCTTGGGCATAGATAAGACCACGCATGGATCGGTTATTGAATTGAACAGTGGCAGCTCATCAGTGAAATTCGATCCTACTCGGGTTACTCAACTCTCTTGGCGTCCCAGGGCTTTTATATACAAGAAATTTTTATCCGACGAAGAGTGTGATCATCTGATCAATCTGGCCAAGGACAAGCTAGAGAAATCTATGGTAGCAGATAATGAATCAGGGAAAAGTGTAATGAGTCAAGTCAGAACGAGCTCCGGGATGTTTCTTTCCAAGGCTCAGGATGAGATAGTTGCTGGTATTGAAGCCAGAATTGCCGCATGGACCTTCCTTCCAATTGAGAATGGCGAGTCTATTCAAATATTGCACTATGAGAATGGTCAGAAGTATGAGCCACATTTTGATTACTTCCATGACAAGGCTAATCAGCAACTGGGAGGCCATCGTATTGCCACTGTGTTGATGTATTTGTCTAATGTTGAGAAGGGTGGTGAGACTGTTTTTCCCAATTCTGAGGCAGGGTTATCCCAGATAAAGGATGATGACTGGTCTGAATGCGCAAAGAAAGGCTATGCAGTAAAACCAGACAAGGGTGATGCCCTGCTGTTCTTTAGTCTGCATCTTGATGCAACTACAGATCCTTCGAGTCTGCACGGAAGCTGCCCTGTGATTGAGGGTGAGAAGTGGTCTGCAACAAAGTGGATTCACGTGAGGGATTTCGACAAACCAATGAAGAGAAGAGACGACGTGGAATGTGTGGATGAGAATGTAAATTGCTCCAAGTGGGCTAAAGTAGGGGAATGTGACAAGAACCCACTTTATATGGTTGGGAATGAGCAAGTCAAAGGATTCTGTATGAAGAGCTGCAATCCATTGTTTGTTCGAAATTTGAAGAAGTTGGCTATAACCAAATTCCGGCTGAGGAGTGGGTCGGTGGAATCTTCTCCTGGTCTGCGGCCACTTCGATATAGGGATGACCTTGTATCAATGGGAAGGCCACCTTGCTGTGATAAATCCAATGTGAAAAGGGGCCTTTGGACTCCTGAGGAGGATGCTAAACTACTCGCTTATGTTTCCAATCATGGCACTGGCAATTGGACTATGGTTCCTAAGAAAGCTGGGTTAAACAGATGTGGTAAGAGCTGTAGGCTTAGATGGACTAACTATCTTAGACCTGACCTCAAGCACCATAGCTTCACAGCCCAAGAAGAGGGCCTTATTATTAACCTTCATCGCGCCATAGGAAGCAGGTGGTCTTTGATTGCAAGGAGACTACCAGGGAGAACAGACAATGATGTGAAGAACCATTGGAACACAAAGCTGAGGAAGAAGCTTATGAAGATGGGAATTGACCCTGTTACCCATAAGCCAGTTTCTCAAGTCCTTTCTGATTTGGGAAGCATTAGTTGCCTCTCTACTATAACCACTGATCAAACACAAGCTCCAAACACCACCAACTTGAATGTCTCCAACCAACTAGATCAAGAGGTCCAATCCCAATTCATTAACCCACCAGAAAACGTTAACATCCAGTTACACCATAAAAATGAAGCTGCATCTTCATGTTCATCGCCTTCGTCATCTTCTTCCTCTAATATCACACAGCTAACCTCACCTTCTCAGGTTATTACTACTGCTGCTGCTGTTCCTTCTCCTGGTTCGTCGTTTGATTGGAGCGAGTTTCTTCTGAGTGACCCGCTCACGTGCACCGAGTTTCAACCGCTGAACCAGTACGAGGTGCAGAACCAAATTCAAGTTTCGAATAATGCAAGTGATGAGGATTTTGGGATTGGGTCTTATGTGGAAAGCATCACGAAACCCCAAGTTTGTGATAAACAAAATTGTGACAGCACTTCGTCTTCTTCTTTGGGTGAAGACTCATTCGTTGATGCTATTTTGAACAGAGATAGTGAAATAAGGGCAGCATTACTCCTTGACGGATCCACCAACTACTAG 2031 0.4426 MDSRFVLAILFCFLCFLPHLSVSSIRSLGLGIDKTTHGSVIELNSGSSSVKFDPTRVTQLSWRPRAFIYKKFLSDEECDHLINLAKDKLEKSMVADNESGKSVMSQVRTSSGMFLSKAQDEIVAGIEARIAAWTFLPIENGESIQILHYENGQKYEPHFDYFHDKANQQLGGHRIATVLMYLSNVEKGGETVFPNSEAGLSQIKDDDWSECAKKGYAVKPDKGDALLFFSLHLDATTDPSSLHGSCPVIEGEKWSATKWIHVRDFDKPMKRRDDVECVDENVNCSKWAKVGECDKNPLYMVGNEQVKGFCMKSCNPLFVRNLKKLAITKFRLRSGSVESSPGLRPLRYRDDLVSMGRPPCCDKSNVKRGLWTPEEDAKLLAYVSNHGTGNWTMVPKKAGLNRCGKSCRLRWTNYLRPDLKHHSFTAQEEGLIINLHRAIGSRWSLIARRLPGRTDNDVKNHWNTKLRKKLMKMGIDPVTHKPVSQVLSDLGSISCLSTITTDQTQAPNTTNLNVSNQLDQEVQSQFINPPENVNIQLHHKNEAASSCSSPSSSSSSNITQLTSPSQVITTAAAVPSPGSSFDWSEFLLSDPLTCTEFQPLNQYEVQNQIQVSNNASDEDFGIGSYVESITKPQVCDKQNCDSTSSSSLGEDSFVDAILNRDSEIRAALLLDGSTNY 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g2007 676 FunFam Transcription factor RAX3 361 421 - -
Acco02g2007 676 SUPERFAMILY Homeodomain-like 365 462 IPR009057 -
Acco02g2007 676 CDD SANT 423 466 IPR001005 -
Acco02g2007 676 Gene3D - 361 421 - -
Acco02g2007 676 PANTHER F14D16.11-RELATED 355 668 - -
Acco02g2007 676 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 363 419 IPR017930 -
Acco02g2007 676 MobiDBLite consensus disorder prediction 541 561 - -
Acco02g2007 676 ProSiteProfiles Myb-like domain profile. 416 466 IPR001005 -
Acco02g2007 676 CDD SANT 371 415 IPR001005 -
Acco02g2007 676 ProSiteProfiles ShKT domain profile. 277 319 IPR003582 -
Acco02g2007 676 SMART sant 420 468 IPR001005 -
Acco02g2007 676 SMART sant 367 417 IPR001005 -
Acco02g2007 676 FunFam transcription factor MYB80 423 483 - -
Acco02g2007 676 Gene3D - 422 485 - -
Acco02g2007 676 Gene3D q2cbj1_9rhob like domain 56 262 - -
Acco02g2007 676 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 140 262 IPR005123 -
Acco02g2007 676 ProSitePatterns Acetate and butyrate kinases family signature 1. 40 51 IPR023865 GO:0016301|GO:0016310|GO:0016774
Acco02g2007 676 FunFam Prolyl 4-hydroxylase 4 56 262 - -
Acco02g2007 676 ProSiteProfiles Myb-like domain profile. 363 415 IPR001005 -
Acco02g2007 676 SMART p4hc 64 261 IPR006620 GO:0005506|GO:0016705|GO:0031418
Acco02g2007 676 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 420 470 IPR017930 -
Acco02g2007 676 Pfam Myb-like DNA-binding domain 368 415 IPR001005 -
Acco02g2007 676 Pfam Myb-like DNA-binding domain 423 464 IPR001005 -
Acco02g2007 676 Pfam 2OG-Fe(II) oxygenase superfamily 145 261 IPR044862 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g2007 Acco-ChrAcco02 16195934 16201870 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g2007 355 664 MYB Transcription Factor Family AT3G28470 50.156 2.92e-82 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Acco02g2007 2OG-FeII_Oxy_3 6.9e-21 CL0029