Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g1999 ATGGATGGGGATCACGAAACAAGTGTGGCTCCATCCTCATCAGTCAGTGCAAAGAAGAAGAAGAATGGTTCCATTCGAACCATTTTCATGCACGCTGATACAGCAGATTTGTTCCTCATGGTGCTCGGCGTCATTGGGTCCCTCGGCGACGGTTTCACCACCCCTCTCGTCCTCTTTATCAGTAGCCGCTTGATGAACAGTGTTGGCTCTAGTTCTACCGTCGGTCCAGCTTCTTTTACCCATAACATCAACAAGAATGCGGTGAACATGCTGTATTTGGCTGCTGGTTCCTTCGTCACTTGCTTCCTCGAGGGATATTGCTGGACCAGAACAGGGGAAAGACAAGCTGCCAGAATGAGAGCCAGGTATTTGAAGGCCGTGCTCAGACAAGATGTTGCTTACTTTGATCTTCACGTCACAAGCACGTCGGAGGTCATCACCAGCGTCTCCAACGACAGCCTAGTAATCCAAGATGCTATTGCTGAAAAGGTGCCGAACTTCTTGATGAATGTGTTTATGTTCATCGGAAGCTACGTAGCGGCTTTTGGAATGTTATGGAAGCTGGCTATTGTGGGGTTCCCGTTCGTGGTTCTGCTCGTGATCCCTGGTTTACTTTACGGTAGGGCTCTGATGGGCTTGGCGAGGAAGATGAGAGAGGAGTATAATCGTGCCGGTACAATAGCAGAGCAGGCAATATCTTCCCTAAGAACTGTGTATGCCTTCGTCGGAGAAAGCAAGACCACCGTCGCCTACTCCGATGCTTTACAAGGATCTGTTCAATTGGGGCTCAATCAGGGCTTAGCTAAGGGCTTAGCCATCGGAAGCAACGGCGTCGTCTTCGCCATCTGGTCCTTCACGTCCTATTACGGCAGCCGCCTCGTCATGTACCACGGCGCTAAAGGCGGTACCGTTTTTGCAGTCGGAGCCGCCGTGGCCGTTGGTGGCCTAGCTTTAGGTTCCGCTTTATCGAACGTGAAGTACTTCTCGGAAGCGAGTGCAGCAGGAGAACGTATAATGGAAGTGATAAAAAGAGTTCCGAAGATTGATTCGGACAACATGAGTGGAGAGATTCTGGAGAGAGTTTCAGGGGAAGTGGAATTCGAACACGTACAGTTCGCGTACCCGTCGAGGGCAGCAAGCATAATCCTAAGTGATTTCAACTTGAAGATTCCGGCGGGGAAGACAATGGCCTTAGTGGGAGGCAGTGGATCAGGGAAATCAACAGTGATATCACTTTTACAGAGATTTTATGATCCACTTGTGGGAGAGATAAGGCTTGACGGAGTGGCCATTCACAAGATGCAGCTCAAGTGGCTGAGGTCACAGATGGGTCTGGTCAGCCAAGAGCCTGCTCTGTTCGCCACCAGCATCACGGAGAATGTTCTCTTTGGAAAGGAAGATGCTTCCATTGAAGAGGTCATTCAAGCTGCAAAAGATTCTAATGCTCATAACTTCATTTCAAACCTGCCACAGGGCTACGATACTCAGGTTGGCGAAAGAGGAGTTCAAATGTCAGGCGGGCAAAAACAGAGGATTGCCATTGCCCGAGCAATAATAAAGAAACCAAGACTGCTTCTGCTAGATGAAGCAACCAGTGCGCTAGATTCCGAATCAGAGCGAGTTGTTCAAGAAGCTCTGGACACAGCAGCCGTGGGTCGCACCACAATCATCATCGCCCACCGTTTATCCACCATCCGAAACGCCGATGCCATTGCCGTCGTCCAGAACGGAAAGATCATGGAGATGGGCTCGCACGACGAGCTCATCCAAAACGACGATGGCCTTTACACCTCTCTGGTTCGTCTTCAACAGACAGAAACACTCAAAACCCAACAAGAAGATACTGTCTCTGCCCGGTCTTCTATATCAAACATAGACATGAACAACACAAGTAGCCGCAGGCTTTCCCTGGTGAGTCGTTCTAGCTCTGCTAACTCAATGGCAAGGAATCCAACTTCAGGTGTTGATGAAGACGATGGTCACCATGTCACAGAAGAAAAGAAATTACCTGTTCCTTCGTTTAGGAGATTGCTGGCTCTTAATCTCCCAGAATGGAAGCAGGCAATTATGGGGTGTATAAGTGCGTTTCTCTTTGGTGCGGTTCAGCCATTGTATGCATTCACAATGGGGTCTATGATATCTGTGTATTTCTTGACGGACCACGAAGAGATCAAAAGGAAGACCAGAATTTATTGCCTCTGCTTTTTGGGGTTAGCTATCTTCTCTCTACTTATTAATATAAGCCAGCATTATTATTTTGCTTACATGGGTGAGTACCTAACCAAAAGGGTTAGAGAGAGAATGCTCTCGAAGATTCTCACATTTGAAGTTGGATGGTTCGATCAGGACGAGAATTCCAGTGGTGCTATTTGCTCTCGACTTGCCAAAGATGCCAATGTGGTGAGGTCTTTGGTGGGTGATAGAATGGCTTTACTGGTACAAACTTTTTCAGCAGTGACAATAGCCTGCACAATGGGGTTGGTGATTGCATGGAGGCTGGCACTTGTTATGGTAGCCATTCAGCCTCTTATTATCGCCAGCTTCTACACAAGGCGTGTCCTTCTAAAGAGCATGTCTACCAAAGCCAGTAAAGCCCAAGAGGAAAGTAGCAAGTTAGCTGCTGAAGCGGTTTCAAATCTTCGAACGGTCACTGCCTTCTCTTCACAAGATCGCATACTGAAGATGCTCCAGAAGGCTCAAGAAGGGCCAAGAAAAGAGAGTATTCGTCAATCCTGGTACGCAGGTATAGGCCTGGGATGCTCACAGGGCATTATGTCTTGTACCTGGGCTTTAGACTTTTGGTATGGTGGCAAGCTTATCGCCCATGGTTATATAAACGCAAAAGCACTGTTCGAGACATTCATGATTTTGGTCAGCACAGGACGAGTTATTGCCGATGCCGGAAGTATGACCTCGGACCTGGCCAAGGGTGCTGATTCAGTGGCCTCTGTTTTTGCCGTGTTGGACAAAGATACTAAAATTGAGCCCCAAGACCCAGAGGGGTACCAGCCTGAGAAGATAACTGGCCACATTGAACTTCGGGATATACATTTTGTGTACCCAGCCAGGCCCGACGTGATGATCTTCGAAGGATTTTCACTCAAAATCGATGCCGGGAAATCAACAGCGCTGGTTGGCCAAAGTGGGTCGGGCAAATCAACCATTATAGGGTTAATAGAGAGATTCTACGACCCACTGAAAGGAGCAGTGACCATCGACGGCAAGGACATACGGTCGTATCAACTCAGAGCAGTGAGGAAACACATAGCGCTGGTTAGTCAAGAGCCGACGTTGTTCAGTGGGAGCATAAGAGAGAACATTGCATACGGAGCGTCGGATGAAGTAGGCGAAGCGGAGATCATAGAAGCAGCGAGAGCAGCGAACGCTCACGATTTCATAGGAAGCCTGAAGGATGGATACCACACGTCGTGTGGGGACAGGGGTGTACAGCTGTCGGGAGGGCAGAAGCAGAGGATCGCGATCGCCAGGGCGATATTGAAGAATCCGACGGTGTTGCTGTTGGACGAGGCAACGAGCGCGCTGGACAGCCAATCGGAGAAGGTGGTGCAAGAAGCATTGGAGAGGGTTATGGTGGGGAGGACGAGCGTGGTGGTGGCCCACAGGTTGAGCACCATACAGAACTGTGATCTGATTGCTGTGTTGGATAAAGGCAAAGTGGTGGAGAAAGGGACCCATTCGTCTTTGTTGGCTAAAGGACCAACTGGAGCCTATCACTCTCTGGTGACTCTTCAGAGATCGCCGCCGCCGAACGCCGCTCCCAACACTAGCCAGCGTTGA 3798 0.4934 MDGDHETSVAPSSSVSAKKKKNGSIRTIFMHADTADLFLMVLGVIGSLGDGFTTPLVLFISSRLMNSVGSSSTVGPASFTHNINKNAVNMLYLAAGSFVTCFLEGYCWTRTGERQAARMRARYLKAVLRQDVAYFDLHVTSTSEVITSVSNDSLVIQDAIAEKVPNFLMNVFMFIGSYVAAFGMLWKLAIVGFPFVVLLVIPGLLYGRALMGLARKMREEYNRAGTIAEQAISSLRTVYAFVGESKTTVAYSDALQGSVQLGLNQGLAKGLAIGSNGVVFAIWSFTSYYGSRLVMYHGAKGGTVFAVGAAVAVGGLALGSALSNVKYFSEASAAGERIMEVIKRVPKIDSDNMSGEILERVSGEVEFEHVQFAYPSRAASIILSDFNLKIPAGKTMALVGGSGSGKSTVISLLQRFYDPLVGEIRLDGVAIHKMQLKWLRSQMGLVSQEPALFATSITENVLFGKEDASIEEVIQAAKDSNAHNFISNLPQGYDTQVGERGVQMSGGQKQRIAIARAIIKKPRLLLLDEATSALDSESERVVQEALDTAAVGRTTIIIAHRLSTIRNADAIAVVQNGKIMEMGSHDELIQNDDGLYTSLVRLQQTETLKTQQEDTVSARSSISNIDMNNTSSRRLSLVSRSSSANSMARNPTSGVDEDDGHHVTEEKKLPVPSFRRLLALNLPEWKQAIMGCISAFLFGAVQPLYAFTMGSMISVYFLTDHEEIKRKTRIYCLCFLGLAIFSLLINISQHYYFAYMGEYLTKRVRERMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRMALLVQTFSAVTIACTMGLVIAWRLALVMVAIQPLIIASFYTRRVLLKSMSTKASKAQEESSKLAAEAVSNLRTVTAFSSQDRILKMLQKAQEGPRKESIRQSWYAGIGLGCSQGIMSCTWALDFWYGGKLIAHGYINAKALFETFMILVSTGRVIADAGSMTSDLAKGADSVASVFAVLDKDTKIEPQDPEGYQPEKITGHIELRDIHFVYPARPDVMIFEGFSLKIDAGKSTALVGQSGSGKSTIIGLIERFYDPLKGAVTIDGKDIRSYQLRAVRKHIALVSQEPTLFSGSIRENIAYGASDEVGEAEIIEAARAANAHDFIGSLKDGYHTSCGDRGVQLSGGQKQRIAIARAILKNPTVLLLDEATSALDSQSEKVVQEALERVMVGRTSVVVAHRLSTIQNCDLIAVLDKGKVVEKGTHSSLLAKGPTGAYHSLVTLQRSPPPNAAPNTSQR 1265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g1999 1265 SMART AAA_5 1038 1231 IPR003593 GO:0016887
Acco02g1999 1265 SMART AAA_5 392 578 IPR003593 GO:0016887
Acco02g1999 1265 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 689 976 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Acco02g1999 1265 CDD ABC_6TM_Pgp_ABCB1_D1_like 40 338 - -
Acco02g1999 1265 MobiDBLite consensus disorder prediction 640 664 - -
Acco02g1999 1265 PANTHER ABC TRANSPORTER B FAMILY 8 745 IPR039421 -
Acco02g1999 1265 Gene3D - 355 604 IPR027417 -
Acco02g1999 1265 FunFam ABC transporter B family member 1 27 364 - -
Acco02g1999 1265 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1011 1248 IPR003439 GO:0005524
Acco02g1999 1265 Pfam ABC transporter 383 532 IPR003439 GO:0005524
Acco02g1999 1265 ProSitePatterns ABC transporters family signature. 1151 1165 IPR017871 GO:0005524|GO:0016887
Acco02g1999 1265 SUPERFAMILY ABC transporter transmembrane region 36 349 IPR036640 GO:0005524|GO:0016020
Acco02g1999 1265 CDD ABC_MTABC3_MDL1_MDL2 365 603 - -
Acco02g1999 1265 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 41 330 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Acco02g1999 1265 ProSitePatterns ABC transporters family signature. 504 518 IPR017871 GO:0005524|GO:0016887
Acco02g1999 1265 Pfam ABC transporter transmembrane region 41 307 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Acco02g1999 1265 Pfam ABC transporter transmembrane region 689 958 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Acco02g1999 1265 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 357 603 IPR027417 -
Acco02g1999 1265 SUPERFAMILY ABC transporter transmembrane region 668 996 IPR036640 GO:0005524|GO:0016020
Acco02g1999 1265 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 365 601 IPR003439 GO:0005524
Acco02g1999 1265 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1001 1251 IPR027417 -
Acco02g1999 1265 Coils Coil 855 875 - -
Acco02g1999 1265 CDD ABC_6TM_Pgp_ABCB1_D2_like 678 994 - -
Acco02g1999 1265 Gene3D - 1001 1255 IPR027417 -
Acco02g1999 1265 FunFam Putative ABC transporter B family member 8 654 999 - -
Acco02g1999 1265 Gene3D ABC transporter type 1, transmembrane domain 28 980 IPR036640 GO:0005524|GO:0016020
Acco02g1999 1265 Pfam ABC transporter 1031 1179 IPR003439 GO:0005524
Acco02g1999 1265 CDD ABC_MTABC3_MDL1_MDL2 1011 1251 - -
Acco02g1999 1265 FunFam ABC transporter B family member 4 355 612 - -
Acco02g1999 1265 FunFam ABC transporter B family member 4 1001 1257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g1999 Acco-ChrAcco02 16079018 16085822 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g1999 690 1261 Calmodulin-binding Proteins AT2G36910 38.368 9.27e-119 399