Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g1998 ATGACGAAGAGAAAAACAAATGACTCCAATGGTCAATCCCATGACCATGGAGGAGGCGGAGATATAAGAGGAGGAGGAGGAGCTGCTTTGCAGAATTTGACTTACACCCATATGGTCAATCCCATGACCATGCCACTGTCCTTTTTGTCTTTACTGAAACAAATCTTTAAGAACCAACCAGAAAAATATATAACCTTCCAGGCGATCATGGTGGATTTCAAGGCTCAAAGGATTGACATTGCTGAAGTTGGAGACAAGGTGAAGGAACTGTTCGAAGGGCATAACGATTTGATTTCTAGGTTCAATGCCTTCTTGCCAAAAGGCTATGAGATAAGTCCTGGTGATGAGGACGAGGCTCCCCCAAAAAAGAAAGGGGTTAACTATGAAGAGGCTCTGGATTTTGTATACAAGATAAAAGTTTTGCTCTCCCAGGAACGATTTCAAGATGATGATCATGTATACCTATCATTCATGGACATTTTGAATATGTACCGATCAAATGTCAGGGATATAGCAGAGGTTAATATGGAGCAATATCATCAACGAGGTAAGCTTATTACTTCTCATAATGACATTCTCAGCATTCATTCATCTAAGCTGGATGGTGGCAAAGCAATGATTAAAAAGCACAAGAAGCAGGTTGAGGAAATTAGTGATGGGAGAGTTCTTGATCGGAATGAGAGAGAACATGAACTTTTTGACAACCGTCAAGAAGTAACTGACCCTTTTTTTCCAGTTTTGTTTCACCAAAATGTTGTCAATTCAACATTACTGGTGTTGTGGGTAGCCAATTCTATTGGAGAGTTTCCTGATCTTATGGATGAATATAAAAAATTCCAGGACGAAGATTCATTTGGTGGTGACGATCGATTACTCAGATCATCAAAGTTGGAAGACAGAGAAAGAGACCATAAGCGTGAGGTGGTTGTCTCTAAAGAGAGTAAAGAAAACAATGAGAAAGACGATGATTTCGTGGACAAAGCTGAAAATACTGGTCAATTACAAAGATCCCCAAAGTTGGAAGACAGAGATAGAAACCAGAAGCGTGATGAGAAAGAGAGTAAAGAAAAACGTGATGAGAAATACATGGGGATATCAATTCATGAGCTTGACCTCAGTGATTGTGAACGTTGTAACGCCAGCTACCGGCGTCTTCCTGAAGATTATCCAATTTCTATCCCCAGTGGCAGCAGTGAGATTGGTACTGAAGTGTTGAATGATCACTGGGTATCTGTAACTTCGGGAAGTGAGGAAGAATCTTTCAAACATTTGCGCCGGAATCCATTTGAGCTGGACTTGTTAATAGAGCGTGTGGAGTCAACTGCCAAACATGCAACGGACTTTTACAATAGTATAACTGGAAACGAAATCAATATTGAGGATCCAATCCGTATTGAAGAATACCTTAGTGTTATACATTTAAGATGCATTGAGAAACTGTATGATGACCATGGACTTGAAGTTATAGAGGCATTACGTAAGGATCCTGCTGTTGCTTTGCCTGTGATAATGAATCGACTAGAGCAGAAAAGGAAGGAATTGAGGGAGCTTCATTCAAAATTCCGAAAGGTCTGGGCGAAAGATTATGCTAAAAACCACGAAAAATCACGTGATCATCGTAGTCTCAGTTTCAAACGAGAAGATTCCAAGAACTTGAATCCAAAAGCAGCTACTGAGAATAGGAGAGATGGTTCAGAAAATGTAGATTGTAATGCTAAAGTCTCTGTAGCCAAGTCTCAAAGTGGCAATGTATCTAGGGTGGAGCGTCGTGACACGGCAACTCCAGATTCTTTGGCCAACGGAGTTCTAATTCAAAGCAAGTACCATGAAGAAAAGGAAGAGGGTGAAATATCTCCCTCTCCAAATGGTGATTGCGACGATGACGCTTTTGAAGGTGGTGAAGATGTATCAGGTAGGGAGTACTCTCAGGAAGAGCATGATAAGGGGAAGGGAGAAAAGGAACATGATGATATTGATGATAATAAAGCAGAAGTTGTGAGAATCTGTAATGCAGAATTTGTTTCAGATGGCTCATTGTTAGAAAGCTCCTTTTTGTCTGCTAAACCTGTTTCAAAGTACATACCCCCAGTTTTACTGGAAGAAAGAGGAGAATCAAGGGTTATCTATGGAAATGATGATTTCTATGTGCTTTTCAGGCTTCATCATATTTTGTATGAAAGGATCTTATCAGCAAAAACAAATTCAATGAAGTCTGAAGTGAAGCGTAGAGTTGCTATGAAAGTGATGCTTAGACTTGCAAAGAAAGTGATGCTTAGAGTTGCAAAGAAAGTGAAGCCTAGAGTTGCAAAGAAAGTGAAGCCTAGAGTTGCAAAGAATGCTAATTCTTCAGACCCATATTCAAGATTTATGAATGCCCTTTACAAATTCATTGGTGGACATGTTGACGAAGAAAAGTTTGAAGGTGAATGCCTAGAAATTTTTGGACCCCAGTCATACAAGCTATTCACATTGAACAAGTTGATCCATAAATTGGTTAAACAGCTTCAAGTGGTTGCAAATGGTGAAGTAAATGATGAAATTCTTCAGTTGTTTGAGTATCAAAATTCTCAGACACCCGAGAGGCTAACTCATTTAGCGTATCTTGGGAATGCACGTGTGATCCTCCCTGACGAGAATATATATCGCCTGGAATACTCATCTGGCCCTTGCAAACTATTCATCTGGCTAACGGACAGAACAAATGAAATGCCAACAGCCATTAATCCAAATTATGCTGATTATCTTTACAATGATTTGCTATCAGTCTTTCCTCTCAAAGAGGAACCCAAAGGAATTATGCTACAAAGGCACAAGCGCAAGCGTGGTGCTTCAGATGAGTTTCCAGATATGGAGGGTGTTATAGTAATTAACCAATTAGAGTATGTGATGGATTGCAACTCATCCAAGTCCAAGTATGCTCCATACAAAGAAGACATCTTATATCGCCGCCGAAAGAAGCAAAAGACATGGTCCAAACATAACAAAGCAAGGGAAGAGAGATACCACAGGCTTTTTCGGTAG 3021 0.4002 MTKRKTNDSNGQSHDHGGGGDIRGGGGAALQNLTYTHMVNPMTMPLSFLSLLKQIFKNQPEKYITFQAIMVDFKAQRIDIAEVGDKVKELFEGHNDLISRFNAFLPKGYEISPGDEDEAPPKKKGVNYEEALDFVYKIKVLLSQERFQDDDHVYLSFMDILNMYRSNVRDIAEVNMEQYHQRGKLITSHNDILSIHSSKLDGGKAMIKKHKKQVEEISDGRVLDRNEREHELFDNRQEVTDPFFPVLFHQNVVNSTLLVLWVANSIGEFPDLMDEYKKFQDEDSFGGDDRLLRSSKLEDRERDHKREVVVSKESKENNEKDDDFVDKAENTGQLQRSPKLEDRDRNQKRDEKESKEKRDEKYMGISIHELDLSDCERCNASYRRLPEDYPISIPSGSSEIGTEVLNDHWVSVTSGSEEESFKHLRRNPFELDLLIERVESTAKHATDFYNSITGNEINIEDPIRIEEYLSVIHLRCIEKLYDDHGLEVIEALRKDPAVALPVIMNRLEQKRKELRELHSKFRKVWAKDYAKNHEKSRDHRSLSFKREDSKNLNPKAATENRRDGSENVDCNAKVSVAKSQSGNVSRVERRDTATPDSLANGVLIQSKYHEEKEEGEISPSPNGDCDDDAFEGGEDVSGREYSQEEHDKGKGEKEHDDIDDNKAEVVRICNAEFVSDGSLLESSFLSAKPVSKYIPPVLLEERGESRVIYGNDDFYVLFRLHHILYERILSAKTNSMKSEVKRRVAMKVMLRLAKKVMLRVAKKVKPRVAKKVKPRVAKNANSSDPYSRFMNALYKFIGGHVDEEKFEGECLEIFGPQSYKLFTLNKLIHKLVKQLQVVANGEVNDEILQLFEYQNSQTPERLTHLAYLGNARVILPDENIYRLEYSSGPCKLFIWLTDRTNEMPTAINPNYADYLYNDLLSVFPLKEEPKGIMLQRHKRKRGASDEFPDMEGVIVINQLEYVMDCNSSKSKYAPYKEDILYRRRKKQKTWSKHNKAREERYHRLFR 1006
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g1998 1006 Pfam C-terminal domain of Sin3a protein 709 980 IPR031693 -
Acco02g1998 1006 MobiDBLite consensus disorder prediction 302 362 - -
Acco02g1998 1006 MobiDBLite consensus disorder prediction 572 588 - -
Acco02g1998 1006 MobiDBLite consensus disorder prediction 632 658 - -
Acco02g1998 1006 Pfam Sin3 family co-repressor 376 433 IPR013194 -
Acco02g1998 1006 Gene3D Paired amphipathic helix 45 106 IPR036600 GO:0006355
Acco02g1998 1006 MobiDBLite consensus disorder prediction 536 658 - -
Acco02g1998 1006 SUPERFAMILY PAH2 domain 46 109 IPR036600 GO:0006355
Acco02g1998 1006 SMART hdac_interact2seq4b 374 462 IPR013194 -
Acco02g1998 1006 MobiDBLite consensus disorder prediction 336 362 - -
Acco02g1998 1006 MobiDBLite consensus disorder prediction 302 329 - -
Acco02g1998 1006 ProSiteProfiles PAH domain profile. 35 108 IPR003822 GO:0006355
Acco02g1998 1006 PANTHER SIN3B-RELATED 46 852 IPR039774 GO:0003714
Acco02g1998 1006 Gene3D Paired amphipathic helix 121 201 IPR036600 GO:0006355
Acco02g1998 1006 MobiDBLite consensus disorder prediction 536 568 - -
Acco02g1998 1006 Pfam Paired amphipathic helix repeat 61 105 IPR003822 GO:0006355
Acco02g1998 1006 SUPERFAMILY PAH2 domain 121 176 IPR036600 GO:0006355
Acco02g1998 1006 FunFam Paired amphipathic helix protein Sin3 45 106 - -
Acco02g1998 1006 Coils Coil 504 524 - -
Acco02g1998 1006 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g1998 Acco-ChrAcco02 16049899 16058464 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g1998 46 120 WRKY Transcription Factor Family AT4G12020 40.000 2.74e-08 56.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Acco02g1998 Sin3a_C 9.8e-44 No_clan