Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g1994 ATGTCTTCGTCTGTTCCTCAAGAATCTGATTTCGCCTCACAGATCTACTCCCGGAAAGACAAGTCACTTGGATTACTTAGCTCTAACTTCCTCAAGTTATATAATCGTGAAGGTGTTGGGACGATTGGACTTGACGATGCTGCTTCCCGACTAGGAGTTCAGCGTCGCCGCATGTACGATGTAGTCAACATATTGGAGAGTGTTGGAATTGTGGCTAGAAAAGGGAAAAATCTATACCTATGGAAAGGTTTCAGAGAAATTCCTCGAGCTTTGGACGAGCTTAAGGAAGAGGGTATGAGAGAAAAATTTGATGCAGCCTACTGCAGGTCAGCTGAAGCATCAAAGAACAAAGAAACCGGTGGTTCTGAAACTAAGACCGTTCCTTTGGCACCGTCATTGCCCAAAACTGACAGCTGCAGAAGAGACAAGTCCATGGCACTTCTGACGGATAATTTCATAAAGCTCTTCCTTTGTTCGGATGTTAAAATTCTCTTGCTTGAAGATGCTGCAAAGATAATGCCGGGCGATGCTCAGAATTCAACTGCCTTGAGAACAAAAGTCAGACGTTTATATGACATTGCAAATGTGCTTTCATCTATCAATCTGATCGAGAAGACAAATCACCCCGAGTTTAGGAAAACAGCATATAGGTGGTTGGGAGGGAAAGCCAGTAGAGAATCTGATGGCAGCTTGGATCAAAGTGCATCCAGGAAGAGAGCGTTTGGAGCGGAAATTACAAATTACAGTTTAAAGAGAAAGAAAACAGATTCCTCAATGGATCCGCAGCCCCATGAACAGATTATGCTAGTGTATGGAAAACAAGATGAGTTGGAAAATGAATACAGACGTAAATCTTTGGAGCAACCCCTTAAATGCAGTTCAAAGGCCATAGACTTTGGCCCTTTCGCTCCTGTCAAGTTTAGAAGAGAAGATCAAGAGAACAGACATACGAGACAGGTTCGTGACGTGGAGACAATGAGTTCTAAATAG 990 0.4313 MSSSVPQESDFASQIYSRKDKSLGLLSSNFLKLYNREGVGTIGLDDAASRLGVQRRRMYDVVNILESVGIVARKGKNLYLWKGFREIPRALDELKEEGMREKFDAAYCRSAEASKNKETGGSETKTVPLAPSLPKTDSCRRDKSMALLTDNFIKLFLCSDVKILLLEDAAKIMPGDAQNSTALRTKVRRLYDIANVLSSINLIEKTNHPEFRKTAYRWLGGKASRESDGSLDQSASRKRAFGAEITNYSLKRKKTDSSMDPQPHEQIMLVYGKQDELENEYRRKSLEQPLKCSSKAIDFGPFAPVKFRREDQENRHTRQVRDVETMSSK 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g1994 329 SMART E2F_TDP_2 18 83 IPR003316 GO:0005667|GO:0006355
Acco02g1994 329 SMART E2F_TDP_2 140 220 IPR003316 GO:0005667|GO:0006355
Acco02g1994 329 PANTHER TRANSCRIPTION FACTOR E2F 10 308 IPR015633 GO:0000978|GO:0006357
Acco02g1994 329 FunFam E2F transcription factor-like E2FE 135 222 - -
Acco02g1994 329 Pfam E2F/DP family winged-helix DNA-binding domain 19 83 IPR003316 GO:0005667|GO:0006355
Acco02g1994 329 Pfam E2F/DP family winged-helix DNA-binding domain 142 220 IPR003316 GO:0005667|GO:0006355
Acco02g1994 329 SUPERFAMILY "Winged helix" DNA-binding domain 17 81 IPR036390 -
Acco02g1994 329 MobiDBLite consensus disorder prediction 114 135 - -
Acco02g1994 329 MobiDBLite consensus disorder prediction 307 323 - -
Acco02g1994 329 MobiDBLite consensus disorder prediction 307 329 - -
Acco02g1994 329 SUPERFAMILY "Winged helix" DNA-binding domain 142 220 IPR036390 -
Acco02g1994 329 FunFam E2F transcription factor 8 13 85 - -
Acco02g1994 329 Gene3D - 13 85 IPR036388 -
Acco02g1994 329 Gene3D - 134 222 IPR036388 -
Acco02g1994 329 MobiDBLite consensus disorder prediction 115 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g1994 Acco-ChrAcco02 16035913 16038158 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g1994 1 328 E2F-DP Transcription Factor Family AT3G01330 47.774 1.89e-92 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Acco02g1994 E2F_TDP 1.7e-17 CL0123